[HTML][HTML] Coalescent Simulations Reveal Hybridization and Incomplete Lineage Sorting in Mediterranean Linaria

JL Blanco-Pastor, P Vargas, BE Pfeil - PloS one, 2012 - journals.plos.org
We examined the phylogenetic history of Linaria with special emphasis on the
Mediterranean sect. Supinae (44 species). We revealed extensive highly supported …

Three genome-based phylogeny of Cupressaceae sl: further evidence for the evolution of gymnosperms and Southern Hemisphere biogeography

ZY Yang, JH Ran, XQ Wang - Molecular phylogenetics and evolution, 2012 - Elsevier
Phylogenetic information is essential to interpret the evolution of species. While DNA
sequences from different genomes have been widely utilized in phylogenetic reconstruction …

Towards a species level tree of the globally diverse genus Chenopodium (Chenopodiaceae)

S Fuentes-Bazan, G Mansion, T Borsch - Molecular Phylogenetics and …, 2012 - Elsevier
Chenopodium is a large and morphologically variable genus of annual and perennial herbs
with an almost global distribution. All subgenera and most sections of Chenopodium were …

Inferring Species Networks from Gene Trees in High-Polyploid North American and Hawaiian Violets (Viola, Violaceae)

T Marcussen, KS Jakobsen, J Danihelka… - Systematic …, 2012 - academic.oup.com
The phylogenies of allopolyploids take the shape of networks and cannot be adequately
represented as bifurcating trees. Especially for high polyploids (ie, organisms with more than …

Misleading results of likelihood‐based phylogenetic analyses in the presence of missing data

MP Simmons - Cladistics, 2012 - Wiley Online Library
The amount of missing data in many contemporary phylogenetic analyses has substantially
increased relative to previous norms, particularly in supermatrix studies that compile …

Complex evolution in Arundinarieae (Poaceae: Bambusoideae): Incongruence between plastid and nuclear GBSSI gene phylogenies

YX Zhang, CX Zeng, DZ Li - Molecular Phylogenetics and Evolution, 2012 - Elsevier
The monophyly of tribe Arundinarieae (the temperate woody bamboos) has been
unequivocally recovered in previous molecular phylogenetic studies. In a recent …

[HTML][HTML] How to Handle Speciose Clades? Mass Taxon-Sampling as a Strategy towards Illuminating the Natural History of Campanula (Campanuloideae)

G Mansion, G Parolly, AA Crowl, E Mavrodiev… - PloS one, 2012 - journals.plos.org
Background Speciose clades usually harbor species with a broad spectrum of adaptive
strategies and complex distribution patterns, and thus constitute ideal systems to …

[HTML][HTML] Diversity and relationships of eggplants from three geographically distant secondary centers of diversity

M Hurtado, S Vilanova, M Plazas, P Gramazio… - 2012 - journals.plos.org
Eggplant (Solanum melongena L.) was domesticated in the Indo-Birmanian region, which is
also the primary center of diversity for this crop. From there eggplant spread to other regions …

Incomplete lineage sorting or secondary admixture: disentangling historical divergence from recent gene flow in the V inous‐throated parrotbill (P aradoxornis …

Y Qu, R Zhang, Q Quan, G Song, SH Li… - Molecular …, 2012 - Wiley Online Library
Although P leistocene glaciations had a major impact on the population genetic patterns of
many species in N orth A merica and E urope, it remains unclear how these climatic …

A fully resolved chloroplast phylogeny of the brassica crops and wild relatives (Brassicaceae: Brassiceae): Novel clades and potential taxonomic implications

T Arias, JC Pires - Taxon, 2012 - Wiley Online Library
Brassicas boast an enormous diversity of economically important products. Strikingly,
relationships among main lineages are still unknown. The phylogeny of the tribe Brassiceae …