Crop genomics: advances and applications
The completion of reference genome sequences for many important crops and the ability to
perform high-throughput resequencing are providing opportunities for improving our …
perform high-throughput resequencing are providing opportunities for improving our …
Genotyping-by-sequencing in plants
S Deschamps, V Llaca, GD May - Biology, 2012 - mdpi.com
The advent of next-generation DNA sequencing (NGS) technologies has led to the
development of rapid genome-wide Single Nucleotide Polymorphism (SNP) detection …
development of rapid genome-wide Single Nucleotide Polymorphism (SNP) detection …
[HTML][HTML] The tomato genome sequence provides insights into fleshy fruit evolution
xx Tomato Genome Consortium - Nature, 2012 - ncbi.nlm.nih.gov
AUTHOR CONTRIBUTIONS AAL, ABA, ABE, ABG, ABO, AFI, AGR, AHA, AHU, AJA, AJM,
AJO, AKM, AKS, AKT, AMO, APA, ARI, ASI, ATR, AUS, AVE, BAR, BAW, BCK, BCM, BDK …
AJO, AKM, AKS, AKT, AMO, APA, ARI, ASI, ATR, AUS, AVE, BAR, BAW, BCK, BCM, BDK …
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify
putative homologous chromosomal regions, and align these regions using genes as …
putative homologous chromosomal regions, and align these regions using genes as …
A physical, genetic and functional sequence assembly of the barley genome.
Barley (Hordeum vulgare L.) is among the world's earliest domesticated and most important
crop plants. It is diploid with a large haploid genome of 5.1 gigabases (Gb). Here we present …
crop plants. It is diploid with a large haploid genome of 5.1 gigabases (Gb). Here we present …
Analysis of the bread wheat genome using whole-genome shotgun sequencing
R Brenchley, M Spannagl, M Pfeifer, GLA Barker… - Nature, 2012 - nature.com
Bread wheat (Triticum aestivum) is a globally important crop, accounting for 20 per cent of
the calories consumed by humans. Major efforts are underway worldwide to increase wheat …
the calories consumed by humans. Major efforts are underway worldwide to increase wheat …
Phytozome: a comparative platform for green plant genomics
DM Goodstein, S Shu, R Howson… - Nucleic acids …, 2012 - academic.oup.com
The number of sequenced plant genomes and associated genomic resources is growing
rapidly with the advent of both an increased focus on plant genomics from funding agencies …
rapidly with the advent of both an increased focus on plant genomics from funding agencies …
Reference genome sequence of the model plant Setaria
We generated a high-quality reference genome sequence for foxtail millet (Setaria italica).
The∼ 400-Mb assembly covers∼ 80% of the genome and> 95% of the gene space. The …
The∼ 400-Mb assembly covers∼ 80% of the genome and> 95% of the gene space. The …
[PDF][PDF] Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers
RK Varshney, W Chen, Y Li, AK Bharti… - Nature …, 2012 - nature.com
Pigeonpea is an important legume food crop grown primarily by smallholder farmers in
many semi-arid tropical regions of the world. We used the Illumina next-generation …
many semi-arid tropical regions of the world. We used the Illumina next-generation …
[HTML][HTML] Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential
Foxtail millet (Setaria italica), a member of the Poaceae grass family, is an important food
and fodder crop in arid regions and has potential for use as a C 4 biofuel. It is a model …
and fodder crop in arid regions and has potential for use as a C 4 biofuel. It is a model …