Mechanism of substrate selection by a highly specific CRISPR endoribonuclease
SH Sternberg, RE Haurwitz, JA Doudna - Rna, 2012 - rnajournal.cshlp.org
Bacteria and archaea possess adaptive immune systems that rely on small RNAs for
defense against invasive genetic elements. CRISPR (c lustered r egularly i nterspaced s hort …
defense against invasive genetic elements. CRISPR (c lustered r egularly i nterspaced s hort …
Crystal structure of the DNA-bound VapBC2 antitoxin/toxin pair from Rickettsia felis
MJ Maté, R Vincentelli, N Foos, D Raoult… - Nucleic acids …, 2012 - academic.oup.com
Besides their commonly attributed role in the maintenance of low-copy number plasmids,
toxin/antitoxin (TA) loci, also called 'addiction modules', have been found in chromosomes …
toxin/antitoxin (TA) loci, also called 'addiction modules', have been found in chromosomes …
Protein-DNA docking with a coarse-grained force field
P Setny, RP Bahadur, M Zacharias - BMC bioinformatics, 2012 - Springer
Background Protein-DNA interactions are important for many cellular processes, however
structural knowledge for a large fraction of known and putative complexes is still lacking …
structural knowledge for a large fraction of known and putative complexes is still lacking …
Self-assembly of ordered water tetramers in an encapsulated [Br (H 2 O) 12]− complex
Self-assembly of ordered water tetramers in an encapsulated [Br(H 2 O) 12 ] − complex -
Chemical Communications (RSC Publishing) DOI:10.1039/C2CC30767G Royal Society of …
Chemical Communications (RSC Publishing) DOI:10.1039/C2CC30767G Royal Society of …
Opposites attract: shape and electrostatic complementarity in protein-DNA complexes
Protein-DNA binding plays a key role in both gene regulation–through highly specific
transcription factor-DNA interactions–and in chromatin organization, through the largely non …
transcription factor-DNA interactions–and in chromatin organization, through the largely non …
Solvent structure
C Mattos, D Ringe - 2012 - Wiley Online Library
This chapter summarises empirical information on the structure of water molecules bound to
proteins. The focus is on structures solved by X-ray crystallography, although …
proteins. The focus is on structures solved by X-ray crystallography, although …
Study of intermolecular contacts in the proline-rich homeodomain (PRH)–DNA complex using molecular dynamics simulations
S Jalili, L Karami - European Biophysics Journal, 2012 - Springer
The proline-rich homeodomain (PRH)–DNA complex consists of a protein with 60 residues
and a 13-base-pair DNA. The PRH protein is a transcription factor that plays a key role in the …
and a 13-base-pair DNA. The PRH protein is a transcription factor that plays a key role in the …
Oligonucleotide binding proteins: the occurrence of dimer and multimer formation
J Wilce, J Vivian, M Wilce - Protein Dimerization and Oligomerization in …, 2012 - Springer
Protein dimers and multimers are often employed by nature for DNA and RNA handling and
formation of specific, high-affinity protein-oligonucleotide complexes. The repeating structure …
formation of specific, high-affinity protein-oligonucleotide complexes. The repeating structure …
Molecular dynamics simulations of RNA molecules
The central role of RNA in numerous biological processes including translation, 1 protein
localization, 2 gene regulation, 3 RNA processing, 4 and viral replication5 calls for a …
localization, 2 gene regulation, 3 RNA processing, 4 and viral replication5 calls for a …
Restriction enzymes in microbiology, biotechnology and biochemistry
GG Wilson, H Wang, DF Heiter… - …, 2012 - revistasnicaragua.cnu.edu.ni
Since their discovery in the nineteen-seventies, a collection of simple enzymes termed Type
II restriction endonucleases, made by microbes to ward off viral infections, have transformed …
II restriction endonucleases, made by microbes to ward off viral infections, have transformed …