A beginner's guide to eukaryotic genome annotation

M Yandell, D Ence - Nature Reviews Genetics, 2012 - nature.com
The falling cost of genome sequencing is having a marked impact on the research
community with respect to which genomes are sequenced and how and where they are …

Tools to kill: Genome of one of the most destructive plant pathogenic fungi Macrophomina phaseolina

MS Islam, MS Haque, MM Islam, EM Emdad, A Halim… - BMC genomics, 2012 - Springer
Background Macrophomina phaseolina is one of the most destructive necrotrophic fungal
pathogens that infect more than 500 plant species throughout the world. It can grow rapidly …

Comparative Genomics of the Apicomplexan Parasites Toxoplasma gondii and Neospora caninum: Coccidia Differing in Host Range and Transmission Strategy

AJ Reid, SJ Vermont, JA Cotton, D Harris… - PLoS …, 2012 - journals.plos.org
Toxoplasma gondii is a zoonotic protozoan parasite which infects nearly one third of the
human population and is found in an extraordinary range of vertebrate hosts. Its …

Genome sequences of wild and domestic bactrian camels

Nature communications, 2012 - nature.com
Bactrian camels serve as an important means of transportation in the cold desert regions of
China and Mongolia. Here we present a 2.01 Gb draft genome sequence from both a wild …

Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes

CE Schnitzler, K Pang, ML Powers, AM Reitzel… - BMC biology, 2012 - Springer
Background Calcium-activated photoproteins are luciferase variants found in photocyte cells
of bioluminescent jellyfish (Phylum Cnidaria) and comb jellies (Phylum Ctenophora). The …

Comparative genomic analysis and phylogenetic position of Theileria equi

LS Kappmeyer, M Thiagarajan, DR Herndon… - BMC genomics, 2012 - Springer
Background Transmission of arthropod-borne apicomplexan parasites that cause disease
and result in death or persistent infection represents a major challenge to global human and …

The diversification of the LIM superclass at the base of the metazoa increased subcellular complexity and promoted multicellular specialization

BJ Koch, JF Ryan, AD Baxevanis - PLoS One, 2012 - journals.plos.org
Background Throughout evolution, the LIM domain has been deployed in many different
domain configurations, which has led to the formation of a large and distinct group of …

Evaluating High-Throughput Ab Initio Gene Finders to Discover Proteins Encoded in Eukaryotic Pathogen Genomes Missed by Laboratory Techniques

SJ Goodswen, PJ Kennedy, JT Ellis - PLoS One, 2012 - journals.plos.org
Next generation sequencing technology is advancing genome sequencing at an
unprecedented level. By unravelling the code within a pathogen's genome, every possible …

[HTML][HTML] Exploring the Schistosoma mansoni adult male transcriptome using RNA-seq

GT Almeida, MS Amaral, FCF Beckedorff… - Experimental …, 2012 - Elsevier
Schistosoma mansoni is one of the agents of schistosomiasis, a chronic and debilitating
disease. Here we present a transcriptome-wide characterization of adult S. mansoni males …

[HTML][HTML] Genome sequences of wild and domestic bactrian camels

TBCG Sequencing, Analysis Consortium - Nature communications, 2012 - ncbi.nlm.nih.gov
Bactrian camels serve as an important means of transportation in the cold desert regions of
China and Mongolia. Here we present a 2.01 Gb draft genome sequence from both a wild …