[PDF][PDF] Dealing with pervasive transcription

TH Jensen, A Jacquier, D Libri - Molecular cell, 2013 - cell.com
Eukaryotic genomes are pervasively transcribed. However, it is unclear how many newly
found RNAs have functions and how many are byproducts of functional, or spurious …

[HTML][HTML] Disengaging polymerase: terminating RNA polymerase II transcription in budding yeast

HE Mischo, NJ Proudfoot - Biochimica et Biophysica Acta (BBA)-Gene …, 2013 - Elsevier
Termination of transcription by RNA polymerase II requires two distinct processes: The
formation of a defined 3′ end of the transcribed RNA, as well as the disengagement of RNA …

[HTML][HTML] Transcriptome surveillance by selective termination of noncoding RNA synthesis

D Schulz, B Schwalb, A Kiesel, C Baejen, P Torkler… - Cell, 2013 - cell.com
Pervasive transcription of eukaryotic genomes stems to a large extent from bidirectional
promoters that synthesize mRNA and divergent noncoding RNA (ncRNA). Here, we show …

Eukaryotic mRNA decay: methodologies, pathways, and links to other stages of gene expression

JE Pérez-Ortín, P Alepuz, S Chávez… - Journal of molecular …, 2013 - Elsevier
Abstract mRNA concentration depends on the balance between transcription and
degradation rates. On both sides of the equilibrium, synthesis and degradation show …

[PDF][PDF] Kinetic competition between RNA Polymerase II and Sen1-dependent transcription termination

DZ Hazelbaker, S Marquardt, W Wlotzka, S Buratowski - Molecular cell, 2013 - cell.com
The essential helicase-like protein Sen1 mediates termination of RNA Polymerase II (Pol II)
transcription at snoRNAs and other noncoding RNAs in yeast. A mutation in the Pol II …

Stress‐induced lnc RNA s evade nuclear degradation and enter the translational machinery

J Galipon, A Miki, A Oda, T Inada, K Ohta - Genes to Cells, 2013 - Wiley Online Library
Long noncoding RNAs (lncRNAs) play important roles in the regulation of gene expression.
In fission yeast, glucose starvation triggers a transcriptional cascade of polyadenylated …

Basic mechanisms of RNA polymerase II activity and alteration of gene expression in Saccharomyces cerevisiae

CD Kaplan - Biochimica et Biophysica Acta (BBA)-Gene Regulatory …, 2013 - Elsevier
Transcription by RNA polymerase II (Pol II), and all RNA polymerases for that matter, may be
understood as comprising two cycles. The first cycle relates to the basic mechanism of the …

The RNA polymerase II C-terminal domain-interacting domain of yeast Nrd1 contributes to the choice of termination pathway and couples to RNA processing by the …

D Heo, I Yoo, J Kong, M Lidschreiber, A Mayer… - Journal of Biological …, 2013 - ASBMB
The RNA polymerase II (RNApII) C-terminal domain (CTD)-interacting domain (CID) proteins
are involved in two distinct RNApII termination pathways and recognize different …

The role of Ctk1 kinase in termination of small non-coding RNAs

TL Lenstra, A Tudek, S Clauder, Z Xu, ST Pachis… - PLoS …, 2013 - journals.plos.org
Transcription termination in Saccharomyces cerevisiae can be performed by at least two
distinct pathways and is influenced by the phosphorylation status of the carboxy-terminal …

An update on recent methods applied for deciphering the diversity of the noncoding RNA genome structure and function

S Spicuglia, MA Maqbool, D Puthier, JC Andrau - Methods, 2013 - Elsevier
The explosion of high throughput sequencing technologies marked a turn in our way of
understanding the complexity and diversity of the transcriptome, including noncoding …