5-hydroxymethylcytosine and its potential roles in development and cancer
GP Pfeifer, S Kadam, SG Jin - Epigenetics & chromatin, 2013 - Springer
Only a few years ago it was demonstrated that mammalian DNA contains oxidized forms of 5-
methylcytosine (5mC). The base 5-hydroxymethylcytosine (5hmC) is the most abundant of …
methylcytosine (5mC). The base 5-hydroxymethylcytosine (5hmC) is the most abundant of …
A screen for hydroxymethylcytosine and formylcytosine binding proteins suggests functions in transcription and chromatin regulation
Background DNA methylation (5mC) plays important roles in epigenetic regulation of
genome function. Recently, TET hydroxylases have been found to oxidise 5mC to …
genome function. Recently, TET hydroxylases have been found to oxidise 5mC to …
5-hydroxymethylcytosine profiling as an indicator of cellular state
DNA methylation is widely studied in the context of cancer. However, the rediscovery of 5-
hydroxymethylation of DNA adds a new layer of complexity to understanding the epigenetic …
hydroxymethylation of DNA adds a new layer of complexity to understanding the epigenetic …
Divergent mechanisms for enzymatic excision of 5-formylcytosine and 5-carboxylcytosine from DNA
A Maiti, AZ Michelson, CJ Armwood… - Journal of the …, 2013 - ACS Publications
5-Methylcytosine (mC) is an epigenetic mark that impacts transcription, development, and
genome stability, and aberrant DNA methylation contributes to aging and cancer. Active …
genome stability, and aberrant DNA methylation contributes to aging and cancer. Active …
Novel autoproteolytic and DNA-damage sensing components in the bacterial SOS response and oxidized methylcytosine-induced eukaryotic DNA demethylation …
Abstract The bacterial SOS response is an elaborate program for DNA repair, cell cycle
regulation and adaptive mutagenesis under stress conditions. Using sensitive sequence …
regulation and adaptive mutagenesis under stress conditions. Using sensitive sequence …
Selective excision of 5-carboxylcytosine by a thymine DNA glycosylase mutant
H Hashimoto, X Zhang, X Cheng - Journal of molecular biology, 2013 - Elsevier
The mammalian thymine DNA glycosylase (TDG) excises the mismatched base, uracil,
thymine or 5-hydroxymethyluracil (5hmU), as well as removes 5-formylcytosine (5fC) and 5 …
thymine or 5-hydroxymethyluracil (5hmU), as well as removes 5-formylcytosine (5fC) and 5 …
A sensitive, homogeneous fluorescence assay for detection of thymine DNA glycosylase activity based on exonuclease-mediated amplification
C Chen, D Zhou, H Tang, M Liang… - Chemical Communications, 2013 - pubs.rsc.org
A sensitive, homogeneous fluorescence assay for detection of thymine DNA glycosylase
activity based on exonuclease-mediated amplification - Chemical Communications (RSC …
activity based on exonuclease-mediated amplification - Chemical Communications (RSC …
Activity and crystal structure of human thymine DNA glycosylase mutant N140A with 5-carboxylcytosine DNA at low pH
H Hashimoto, X Zhang, X Cheng - DNA repair, 2013 - Elsevier
The mammalian thymine DNA glycosylase (TDG) excises 5-carboxylcytosine (5caC) when
paired with a guanine in a CpG sequence, in addition to mismatched bases. Here we …
paired with a guanine in a CpG sequence, in addition to mismatched bases. Here we …
DNA recognition of 5-carboxylcytosine by a Zfp57 mutant at an atomic resolution of 0.97 Å
Y Liu, YO Olanrewaju, X Zhang, X Cheng - Biochemistry, 2013 - ACS Publications
The Zfp57 gene encodes a KRAB (Krüppel-associated box) domain-containing C2H2 zinc
finger transcription factor that is expressed in early development. Zfp57 protein recognizes …
finger transcription factor that is expressed in early development. Zfp57 protein recognizes …
Decoding 5hmC as an active chromatin mark in the brain and its link to Rett Syndrome
P Ayata - 2013 - digitalcommons.rockefeller.edu
Functions of the nervous system are accompanied at the cellular level by changes in gene
expression, regulated by transcription factors and epigenetic mechanisms, such as histone …
expression, regulated by transcription factors and epigenetic mechanisms, such as histone …