Fungal community analysis by high‐throughput sequencing of amplified markers–a user's guide

BD Lindahl, RH Nilsson, L Tedersoo… - New …, 2013 - Wiley Online Library
Novel high‐throughput sequencing methods outperform earlier approaches in terms of
resolution and magnitude. They enable identification and relative quantification of …

Tree species influence on microbial communities in litter and soil: current knowledge and research needs

CE Prescott, SJ Grayston - Forest Ecology and Management, 2013 - Elsevier
Microbial communities in litter and soil are the functional link through which the tree species
occupying a site may alter rates of soil processes fundamental to nutrient cycling and carbon …

[HTML][HTML] The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses

T Větrovský, P Baldrian - PloS one, 2013 - journals.plos.org
16S ribosomal RNA currently represents the most important target of study in bacterial
ecology. Its use for the description of bacterial diversity is, however, limited by the presence …

Fungal community on decomposing leaf litter undergoes rapid successional changes

J Voříšková, P Baldrian - The ISME journal, 2013 - academic.oup.com
Fungi are considered the primary decomposers of dead plant biomass in terrestrial
ecosystems. However, current knowledge regarding the successive changes in fungal …

Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction

P Trivedi, IC Anderson, BK Singh - Trends in microbiology, 2013 - cell.com
Soil organic carbon performs a number of functions in ecosystems and it is clear that
microbial communities play important roles in land–atmosphere carbon (C) exchange and …

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

SJ Blazewicz, RL Barnard, RA Daly… - The ISME …, 2013 - academic.oup.com
Microbes exist in a range of metabolic states (for example, dormant, active and growing) and
analysis of ribosomal RNA (rRNA) is frequently employed to identify the 'active'fraction of …

Temporal variability in soil microbial communities across land-use types

CL Lauber, KS Ramirez, Z Aanderud, J Lennon… - The ISME …, 2013 - academic.oup.com
Although numerous studies have investigated changes in soil microbial communities across
space, questions about the temporal variability in these communities and how this variability …

[HTML][HTML] Controls on soil microbial community stability under climate change

FT De Vries, A Shade - Frontiers in microbiology, 2013 - frontiersin.org
Soil microbial communities are intricately linked to ecosystem functioning because they play
important roles in carbon and nitrogen cycling. Still, we know little about how soil microbial …

A thready affair: linking fungal diversity and community dynamics to terrestrial decomposition processes

A Van der Wal, TD Geydan, TW Kuyper… - FEMS Microbiology …, 2013 - academic.oup.com
Filamentous fungi are critical to the decomposition of terrestrial organic matter and,
consequently, in the global carbon cycle. In particular, their contribution to degradation of …

The skin microbiome: current perspectives and future challenges

YE Chen, H Tsao - Journal of the American Academy of Dermatology, 2013 - Elsevier
Complex communities of bacteria, fungi, and viruses thrive on our skin. The composition of
these communities depends on skin characteristics, such as sebaceous gland …