Latest developments in molecular docking: 2010–2011 in review
E Yuriev, PA Ramsland - Journal of Molecular Recognition, 2013 - Wiley Online Library
The aim of docking is to accurately predict the structure of a ligand within the constraints of a
receptor binding site and to correctly estimate the strength of binding. We discuss, in detail …
receptor binding site and to correctly estimate the strength of binding. We discuss, in detail …
Combining machine learning systems and multiple docking simulation packages to improve docking prediction reliability for network pharmacology
Increased availability of bioinformatics resources is creating opportunities for the application
of network pharmacology to predict drug effects and toxicity resulting from multi-target …
of network pharmacology to predict drug effects and toxicity resulting from multi-target …
Fragment informatics and computational fragment‐based drug design: an overview and update
C Sheng, W Zhang - Medicinal Research Reviews, 2013 - Wiley Online Library
Fragment‐based drug design (FBDD) is a promising approach for the discovery and
optimization of lead compounds. Despite its successes, FBDD also faces some internal …
optimization of lead compounds. Despite its successes, FBDD also faces some internal …
Docking challenge: protein sampling and molecular docking performance
KM Elokely, RJ Doerksen - Journal of chemical information and …, 2013 - ACS Publications
Computational tools are essential in the drug design process, especially in order to take
advantage of the increasing numbers of solved X-ray and NMR protein–ligand structures …
advantage of the increasing numbers of solved X-ray and NMR protein–ligand structures …
Nitroreductase Detection and Hypoxic Tumor Cell Imaging by a Designed Sensitive and Selective Fluorescent Probe, 7-[(5-Nitrofuran-2-yl)methoxy]-3H-phenoxazin-3 …
Z Li, X Li, X Gao, Y Zhang, W Shi, H Ma - Analytical chemistry, 2013 - ACS Publications
A highly selective and sensitive fluorescence probe, 7-[(5-nitrofuran-2-yl) methoxy]-3 H-
phenoxazin-3-one (1), is developed for imaging the hypoxic status of tumor cells via the …
phenoxazin-3-one (1), is developed for imaging the hypoxic status of tumor cells via the …
Development of a natural products database from the biodiversity of Brazil
M Valli, RN Dos Santos, LD Figueira… - Journal of natural …, 2013 - ACS Publications
We describe herein the design and development of an innovative tool called the NuBBE
database (NuBBEDB), a new Web-based database, which incorporates several classes of …
database (NuBBEDB), a new Web-based database, which incorporates several classes of …
Encoding protein–ligand interaction patterns in fingerprints and graphs
J Desaphy, E Raimbaud, P Ducrot… - Journal of chemical …, 2013 - ACS Publications
We herewith present a novel and universal method to convert protein–ligand coordinates
into a simple fingerprint of 210 integers registering the corresponding molecular interaction …
into a simple fingerprint of 210 integers registering the corresponding molecular interaction …
[HTML][HTML] Flavonoid from Carica papaya inhibits NS2B-NS3 protease and prevents Dengue 2 viral assembly
Dengue virus belongs to the virus family Flaviviridae. Dengue hemorrhagic disease caused
by dengue virus is a public health problem worldwide. The viral non structural 2B and 3 …
by dengue virus is a public health problem worldwide. The viral non structural 2B and 3 …
CSAR benchmark exercise 2011–2012: evaluation of results from docking and relative ranking of blinded congeneric series
KL Damm-Ganamet, RD Smith… - Journal of chemical …, 2013 - ACS Publications
The Community Structure–Activity Resource (CSAR) recently held its first blinded exercise
based on data provided by Abbott, Vertex, and colleagues at the University of Michigan, Ann …
based on data provided by Abbott, Vertex, and colleagues at the University of Michigan, Ann …
Identification of five structurally unrelated quorum-sensing inhibitors of Pseudomonas aeruginosa from a natural-derivative database
Bacteria communicate by means of small signal molecules in a process termed quorum
sensing (QS). QS enables bacteria to organize their activities at the population level …
sensing (QS). QS enables bacteria to organize their activities at the population level …