[PDF][PDF] Beyond GWASs: illuminating the dark road from association to function
Genome-wide association studies (GWASs) have enabled the discovery of common genetic
variation contributing to normal and pathological traits and clinical drug responses, but …
variation contributing to normal and pathological traits and clinical drug responses, but …
Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data
How DNA is organized in three dimensions inside the cell nucleus and how this affects the
ways in which cells access, read and interpret genetic information are among the longest …
ways in which cells access, read and interpret genetic information are among the longest …
A high-resolution map of the three-dimensional chromatin interactome in human cells
A large number of cis-regulatory sequences have been annotated in the human genome,,
but defining their target genes remains a challenge. One strategy is to identify the long …
but defining their target genes remains a challenge. One strategy is to identify the long …
[HTML][HTML] Architectural protein subclasses shape 3D organization of genomes during lineage commitment
Understanding the topological configurations of chromatin may reveal valuable insights into
how the genome and epigenome act in concert to control cell fate during development …
how the genome and epigenome act in concert to control cell fate during development …
[HTML][HTML] Genome architecture: domain organization of interphase chromosomes
WA Bickmore, B Van Steensel - Cell, 2013 - cell.com
The architecture of interphase chromosomes is important for the regulation of gene
expression and genome maintenance. Chromosomes are linearly segmented into hundreds …
expression and genome maintenance. Chromosomes are linearly segmented into hundreds …
[HTML][HTML] Mapping human epigenomes
CM Rivera, B Ren - Cell, 2013 - cell.com
As the second dimension to the genome, the epigenome contains key information specific to
every type of cells. Thousands of human epigenome maps have been produced in recent …
every type of cells. Thousands of human epigenome maps have been produced in recent …
Chromatin connectivity maps reveal dynamic promoter–enhancer long-range associations
In multicellular organisms, transcription regulation is one of the central mechanisms
modelling lineage differentiation and cell-fate determination. Transcription requires dynamic …
modelling lineage differentiation and cell-fate determination. Transcription requires dynamic …
Constitutive nuclear lamina–genome interactions are highly conserved and associated with A/T-rich sequence
W Meuleman, D Peric-Hupkes, J Kind… - Genome …, 2013 - genome.cshlp.org
In metazoans, the nuclear lamina is thought to play an important role in the spatial
organization of interphase chromosomes, by providing anchoring sites for large genomic …
organization of interphase chromosomes, by providing anchoring sites for large genomic …
[HTML][HTML] Chromatin position effects assayed by thousands of reporters integrated in parallel
Reporter genes integrated into the genome are a powerful tool to reveal effects of regulatory
elements and local chromatin context on gene expression. However, so far such reporter …
elements and local chromatin context on gene expression. However, so far such reporter …
High‐throughput sequencing for biology and medicine
WW Soon, M Hariharan, MP Snyder - Molecular systems biology, 2013 - embopress.org
Advances in genome sequencing have progressed at a rapid pace, with increased
throughput accompanied by plunging costs. But these advances go far beyond faster and …
throughput accompanied by plunging costs. But these advances go far beyond faster and …