Legume phylogeny and classification in the 21st century: progress, prospects and lessons for other species–rich clades

Legume Phylogeny Working Group, A Bruneau… - Taxon, 2013 - Wiley Online Library
The Leguminosae, the third–largest angiosperm family, has a global distribution and high
ecological and economic impor tance. We examine how the legume systematic research …

Reprint of: using nuclear gene data for plant phylogenetics: progress and prospects

EA Zimmer, J Wen - Molecular Phylogenetics and Evolution, 2013 - Elsevier
The paper reviews the current state of low and single copy nuclear markers that have been
applied successfully in plant phylogenetics to date, and discusses case studies highlighting …

Identifying hidden rate changes in the evolution of a binary morphological character: the evolution of plant habit in campanulid angiosperms

JM Beaulieu, BC O'Meara, MJ Donoghue - Systematic biology, 2013 - academic.oup.com
The growth of phylogenetic trees in scope and in size is promising from the standpoint of
understanding a wide variety of evolutionary patterns and processes. With trees comprised …

[HTML][HTML] Compensatory base changes in ITS2 secondary structures correlate with the biological species concept despite intragenomic variability in ITS2 sequences–a …

M Wolf, S Chen, J Song, M Ankenbrand, T Müller - PloS one, 2013 - journals.plos.org
Compensatory base changes (CBCs) in internal transcribed spacer 2 (ITS2) rDNA
secondary structures correlate with Ernst Mayr's biological species concept. This hypothesis …

The short ITS2 sequence serves as an efficient taxonomic sequence tag in comparison with the full‐length ITS

J Han, Y Zhu, X Chen, B Liao, H Yao… - BioMed research …, 2013 - Wiley Online Library
An ideal DNA barcoding region should be short enough to be amplified from degraded DNA.
In this paper, we discuss the possibility of using a short nuclear DNA sequence as a barcode …

Phylogeny of Crocus (Iridaceae) based on one chloroplast and two nuclear loci: ancient hybridization and chromosome number evolution

D Harpke, S Meng, T Rutten, H Kerndorff… - Molecular phylogenetics …, 2013 - Elsevier
Crocus consists of about 100 species distributed from western Europe and northern Africa to
western China, with the center of diversity on the Balkan Peninsula and in Asia Minor. Our …

New insights into the evolution of Passiflora subgenus Decaloba (Passifloraceae): phylogenetic relationships and morphological synapomorphies

SE Krosnick, KE Porter-Utley, JM MacDougal… - Systematic …, 2013 - ingentaconnect.com
Phylogenetic relationships of Passiflora subgenus Decaloba were examined using 148 taxa
and four molecular markers: nuclear nrITS, ncpGS, cp trnL-F, and ndhF. Relationships of …

[HTML][HTML] The Internal Transcribed Spacer (ITS) Region and trnhH-psbA Are Suitable Candidate Loci for DNA Barcoding of Tropical Tree Species of India

AM Tripathi, A Tyagi, A Kumar, A Singh, S Singh… - PloS one, 2013 - journals.plos.org
Background DNA barcoding as a tool for species identification has been successful in
animals and other organisms, including certain groups of plants. The exploration of this new …

A consensus secondary structure of ITS2 in the Chlorophyta identified by phylogenetic reconstruction

L Caisová, B Marin, M Melkonian - Protist, 2013 - Elsevier
The definition of species plays a pivotal role in biology. It has been proposed that
Compensatory Base Changes (CBCs) in the fast-evolving Internal Transcribed Spacer 2 …

A fast SNP identification and analysis of intraspecific variation in the medicinal Panax species based on DNA barcoding

X Chen, B Liao, J Song, X Pang, J Han, S Chen - Gene, 2013 - Elsevier
Medicinal plants of the Panax genus belonging to Araliaceae family are well-known, rare
plants used as tonics in traditional Chinese medicine and have been described in the …