Ecological genomics of local adaptation

O Savolainen, M Lascoux, J Merilä - Nature Reviews Genetics, 2013 - nature.com
It is increasingly important to improve our understanding of the genetic basis of local
adaptation because of its relevance to climate change, crop and animal production, and …

Potential for evolutionary responses to climate change–evidence from tree populations

FJ Alberto, SN Aitken, R Alía… - Global change …, 2013 - Wiley Online Library
Evolutionary responses are required for tree populations to be able to track climate change.
Results of 250 years of common garden experiments show that most forest trees have …

Diversity and heritability of the maize rhizosphere microbiome under field conditions

JA Peiffer, A Spor, O Koren, Z Jin… - Proceedings of the …, 2013 - National Acad Sciences
The rhizosphere is a critical interface supporting the exchange of resources between plants
and their associated soil environment. Rhizosphere microbial diversity is influenced by the …

Whole-genome regression and prediction methods applied to plant and animal breeding

G de Los Campos, JM Hickey, R Pong-Wong… - Genetics, 2013 - academic.oup.com
Genomic-enabled prediction is becoming increasingly important in animal and plant
breeding and is also receiving attention in human genetics. Deriving accurate predictions of …

Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels

H Li, Z Peng, X Yang, W Wang, J Fu, J Wang, Y Han… - Nature …, 2013 - nature.com
Maize kernel oil is a valuable source of nutrition. Here we extensively examine the genetic
architecture of maize oil biosynthesis in a genome-wide association study using 1.03 million …

Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype–phenotype relationships and its relevance to crop …

JN Cobb, G DeClerck, A Greenberg, R Clark… - Theoretical and Applied …, 2013 - Springer
More accurate and precise phenotyping strategies are necessary to empower high-
resolution linkage mapping and genome-wide association studies and for training genomic …

Comprehensive genotyping of the USA national maize inbred seed bank

MC Romay, MJ Millard, JC Glaubitz, JA Peiffer… - Genome biology, 2013 - Springer
Background Genotyping by sequencing, a new low-cost, high-throughput sequencing
technology was used to genotype 2,815 maize inbred accessions, preserved mostly at the …

A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica)

G Jia, X Huang, H Zhi, Y Zhao, Q Zhao, W Li, Y Chai… - Nature …, 2013 - nature.com
Foxtail millet (Setaria italica) is an important grain crop that is grown in arid regions. Here we
sequenced 916 diverse foxtail millet varieties, identified 2.58 million SNPs and used 0.8 …

Finding the sources of missing heritability in a yeast cross

JS Bloom, IM Ehrenreich, WT Loo, TLV Lite, L Kruglyak - Nature, 2013 - nature.com
For many traits, including susceptibility to common diseases in humans, causal loci
uncovered by genetic-mapping studies explain only a minority of the heritable contribution to …

CACTA-like transposable element in ZmCCT attenuated photoperiod sensitivity and accelerated the postdomestication spread of maize

Q Yang, Z Li, W Li, L Ku, C Wang, J Ye… - Proceedings of the …, 2013 - National Acad Sciences
The postdomestication adaptation of maize to longer days required reduced photoperiod
sensitivity to optimize flowering time. We performed a genome-wide association study and …