The central dogma decentralized: new perspectives on RNA function and local translation in neurons

CE Holt, EM Schuman - Neuron, 2013 - cell.com
The elaborate morphology of neurons together with the information processing that occurs in
remote dendritic and axonal compartments makes the use of decentralized cell biological …

RBM5, 6, and 10 differentially regulate NUMB alternative splicing to control cancer cell proliferation

EG Bechara, E Sebestyén, I Bernardis, E Eyras… - Molecular cell, 2013 - cell.com
RBM5, a regulator of alternative splicing of apoptotic genes, and its highly homologous
RBM6 and RBM10 are RNA-binding proteins frequently deleted or mutated in lung cancer …

RNA seeds higher-order assembly of FUS protein

JC Schwartz, X Wang, ER Podell, TR Cech - Cell reports, 2013 - cell.com
The abundant nuclear RNA binding protein FUS binds the C-terminal domain (CTD) of RNA
polymerase II in an RNA-dependent manner, affecting Ser2 phosphorylation and …

Orchestration of neurodevelopmental programs by RBFOX1: implications for autism spectrum disorder

BR Bill, JK Lowe, CT DyBuncio, BL Fogel - International review of …, 2013 - Elsevier
Neurodevelopmental and neuropsychiatric disorders result from complex interactions
between critical genetic factors and as-yet-unknown environmental components. To gain …

catRAPID omics: a web server for large-scale prediction of protein–RNA interactions

F Agostini, A Zanzoni, P Klus, D Marchese… - …, 2013 - academic.oup.com
Here we introduce cat RAPID omics, a server for large-scale calculations of protein–RNA
interactions. Our web server allows (i) predictions at proteomic and transcriptomic level;(ii) …

The RNA binding protein RBM38 (RNPC1) regulates splicing during late erythroid differentiation

LA Heinicke, B Nabet, S Shen, P Jiang, S van Zalen… - PloS one, 2013 - journals.plos.org
Alternative pre-mRNA splicing is a prevalent mechanism in mammals that promotes
proteomic diversity, including expression of cell-type specific protein isoforms. We …

Paralogs hnRNP L and hnRNP LL exhibit overlapping but distinct RNA binding constraints

SA Smith, D Ray, KB Cook, MJ Mallory, TR Hughes… - PLoS …, 2013 - journals.plos.org
HnRNP (heterogeneous nuclear ribonucleoprotein) proteins are a large family of RNA-
binding proteins that regulate numerous aspects of RNA processing. Interestingly, several …

Global identification of conserved post-transcriptional regulatory programs in trypanosomatids

HS Najafabadi, Z Lu, C MacPherson… - Nucleic acids …, 2013 - academic.oup.com
While regulatory programs are extensively studied at the level of transcription, elements that
are involved in regulation of post-transcriptional processes are largely unknown, and …

Network cleanup

B Alipanahi, BJ Frey - Nature biotechnology, 2013 - nature.com
Network cleanup | Nature Biotechnology Skip to main content Thank you for visiting nature.com.
You are using a browser version with limited support for CSS. To obtain the best experience, we …

Comprehensive mapping and analysis of Kaposi's sarcoma-associated herpesvirus 3′ UTRs identify differential posttranscriptional control of gene expression in lytic …

LV McClure, RP Kincaid, JM Burke, A Grundhoff… - Journal of …, 2013 - Am Soc Microbiol
ABSTRACT 3′ untranslated regions (UTRs) are known to play an important role in
posttranscriptional regulation of gene expression. Here we map the 3′ UTRs of Kaposi's …