Getting intimate with trypsin, the leading protease in proteomics
E Vandermarliere, M Mueller… - Mass spectrometry …, 2013 - Wiley Online Library
Nowadays, mass spectrometry‐based proteomics is carried out primarily in a bottom‐up
fashion, with peptides obtained after proteolytic digest of a whole proteome lysate as the …
fashion, with peptides obtained after proteolytic digest of a whole proteome lysate as the …
Proteomics-based methods for discovery, quantification, and validation of protein–protein interactions
YV Miteva, HG Budayeva, IM Cristea - Analytical chemistry, 2013 - ACS Publications
Proteins play a fundamental role in establishing the diversity of cellular processes in health
or disease systems. This diversity is accomplished by a vast array of protein functions. In …
or disease systems. This diversity is accomplished by a vast array of protein functions. In …
Punctuated evolution of prostate cancer genomes
The analysis of exonic DNA from prostate cancers has identified recurrently mutated genes,
but the spectrum of genome-wide alterations has not been profiled extensively in this …
but the spectrum of genome-wide alterations has not been profiled extensively in this …
Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity
The incidence of esophageal adenocarcinoma (EAC) has risen 600% over the last 30 years.
With a 5-year survival rate of∼ 15%, the identification of new therapeutic targets for EAC is …
With a 5-year survival rate of∼ 15%, the identification of new therapeutic targets for EAC is …
FunGene: the functional gene pipeline and repository
Ribosomal RNA genes have become the standard molecular markers for microbial
community analysis for good reasons, including universal occurrence in cellular organisms …
community analysis for good reasons, including universal occurrence in cellular organisms …
The Protein Model Portal—a comprehensive resource for protein structure and model information
J Haas, S Roth, K Arnold, F Kiefer, T Schmidt… - Database, 2013 - academic.oup.com
Abstract The Protein Model Portal (PMP) has been developed to foster effective use of 3D
molecular models in biomedical research by providing convenient and comprehensive …
molecular models in biomedical research by providing convenient and comprehensive …
Integration of clinical data with a genome‐scale metabolic model of the human adipocyte
A Mardinoglu, R Agren, C Kampf, A Asplund… - Molecular systems …, 2013 - embopress.org
We evaluated the presence/absence of proteins encoded by 14 077 genes in adipocytes
obtained from different tissue samples using immunohistochemistry. By combining this with …
obtained from different tissue samples using immunohistochemistry. By combining this with …
HBVdb: a knowledge database for Hepatitis B Virus
We have developed a specialized database, HBVdb (http://hbvdb. ibcp. fr), allowing the
researchers to investigate the genetic variability of Hepatitis B Virus (HBV) and viral …
researchers to investigate the genetic variability of Hepatitis B Virus (HBV) and viral …
Energy barriers and driving forces in tRNA translocation through the ribosome
During protein synthesis, tRNAs move from the ribosome's aminoacyl to peptidyl to exit sites.
Here we investigate conformational motions during spontaneous translocation, using …
Here we investigate conformational motions during spontaneous translocation, using …
A guide to best practices for Gene Ontology (GO) manual annotation
R Balakrishnan, MA Harris, R Huntley, K Van Auken… - Database, 2013 - academic.oup.com
Abstract The Gene Ontology Consortium (GOC) is a community-based bioinformatics project
that classifies gene product function through the use of structured controlled vocabularies. A …
that classifies gene product function through the use of structured controlled vocabularies. A …