Modern clinical microbiology: new challenges and solutions

PE Fournier, M Drancourt, P Colson… - Nature Reviews …, 2013 - nature.com
In the twenty-first century, the clinical microbiology laboratory plays a central part in
optimizing the management of infectious diseases and surveying local and global …

Metagenomics for pathogen detection in public health

RR Miller, V Montoya, JL Gardy, DM Patrick, P Tang - Genome medicine, 2013 - Springer
Traditional pathogen detection methods in public health infectious disease surveillance rely
upon the identification of agents that are already known to be associated with a particular …

PRICE: software for the targeted assembly of components of (Meta) genomic sequence data

JG Ruby, P Bellare, JL DeRisi - G3: Genes, Genomes, Genetics, 2013 - academic.oup.com
Low-cost DNA sequencing technologies have expanded the role for direct nucleic acid
sequencing in the analysis of genomes, transcriptomes, and the metagenomes of whole …

The perils of pathogen discovery: origin of a novel parvovirus-like hybrid genome traced to nucleic acid extraction spin columns

SN Naccache, AL Greninger, D Lee, LL Coffey… - Journal of …, 2013 - Am Soc Microbiol
Next-generation sequencing was used for discovery and de novo assembly of a novel,
highly divergent DNA virus at the interface between the Parvoviridae and Circoviridae. The …

[HTML][HTML] Viral pathogen discovery

CY Chiu - Current opinion in microbiology, 2013 - Elsevier
Highlights•Pathogen discovery is critically important to infectious diseases and public
health.•Nearly all new outbreaks are caused by the emergence of novel viruses.•Genomic …

Vaccines for viral hemorrhagic fevers—progress and shortcomings

D Falzarano, H Feldmann - Current opinion in virology, 2013 - Elsevier
Highlights•Dengue vaccine trial shows limited protection against Dengue 2 but no safety
concerns.•Development of Rift Valley fever vaccines that are safe in pregnant …

[HTML][HTML] Cell culture and electron microscopy for identifying viruses in diseases of unknown cause

CS Goldsmith, TG Ksiazek, PE Rollin… - Emerging Infectious …, 2013 - ncbi.nlm.nih.gov
During outbreaks of infectious diseases or in cases of severely ill patients, it is imperative to
identify the causative agent. This report describes several events in which virus isolation and …

The genomics of emerging pathogens

C Firth, WI Lipkin - Annual review of genomics and human …, 2013 - annualreviews.org
Globalization and industrialization have dramatically altered the vulnerability of human and
animal populations to emerging and reemerging infectious diseases while shifting both the …

What can we predict about viral evolution and emergence?

EC Holmes - Current opinion in virology, 2013 - Elsevier
Predicting the emergence of infectious diseases has been touted as one of the most
important goals of biomedical science, with an array of funding schemes and research …

The Genome Sequence of Lone Star Virus, a Highly Divergent Bunyavirus Found in the Amblyomma americanum Tick

A Swei, BJ Russell, SN Naccache, B Kabre… - PLoS …, 2013 - journals.plos.org
Viruses in the family Bunyaviridae infect a wide range of plant, insect, and animal hosts. Tick-
borne bunyaviruses in the Phlebovirus genus, including Severe Fever with …