Biogenesis, turnover, and mode of action of plant microRNAs

K Rogers, X Chen - The Plant Cell, 2013 - academic.oup.com
MicroRNAs (miRNAs) are small RNAs that control gene expression through silencing of
target mRNAs. Mature miRNAs are processed from primary miRNA transcripts by the …

Classification and comparison of small RNAs from plants

MJ Axtell - Annual review of plant biology, 2013 - annualreviews.org
Regulatory small RNAs, which range in size from 20 to 24 nucleotides, are ubiquitous
components of endogenous plant transcriptomes, as well as common responses to …

[HTML][HTML] The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin

A Zemach, MY Kim, PH Hsieh, D Coleman-Derr… - Cell, 2013 - cell.com
Nucleosome remodelers of the DDM1/Lsh family are required for DNA methylation of
transposable elements, but the reason for this is unknown. How DDM1 interacts with other …

The Amborella Genome and the Evolution of Flowering Plants

Amborella Genome Project, VA Albert, WB Barbazuk… - Science, 2013 - science.org
Introduction Darwin famously characterized the rapid rise and early diversification of
flowering plants (angiosperms) in the fossil record as an “abominable mystery.” Identifying …

[HTML][HTML] Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome

H Stroud, MVC Greenberg, S Feng, YV Bernatavichute… - Cell, 2013 - cell.com
Cytosine methylation is involved in various biological processes such as silencing of
transposable elements (TEs) and imprinting. Multiple pathways regulate DNA methylation in …

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening

S Zhong, Z Fei, YR Chen, Y Zheng, M Huang… - Nature …, 2013 - nature.com
Ripening of tomato fruits is triggered by the plant hormone ethylene, but its effect is restricted
by an unknown developmental cue to mature fruits containing viable seeds. To determine …

RNA silencing suppression by plant pathogens: defence, counter-defence and counter-counter-defence

N Pumplin, O Voinnet - Nature Reviews Microbiology, 2013 - nature.com
RNA silencing is a central regulator of gene expression in most eukaryotes and acts both at
the transcriptional level through DNA methylation and at the post-transcriptional level …

Long noncoding RNAs: past, present, and future

JTY Kung, D Colognori, JT Lee - Genetics, 2013 - academic.oup.com
Long noncoding RNAs (lncRNAs) have gained widespread attention in recent years as a
potentially new and crucial layer of biological regulation. lncRNAs of all kinds have been …

Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks

Q Fei, R Xia, BC Meyers - The Plant Cell, 2013 - academic.oup.com
Plant genomes are the source of large numbers of small RNAs, generated via a variety of
genetically separable pathways. Several of these pathways converge in the production of …

Genomic and epigenetic insights into the molecular bases of heterosis

ZJ Chen - Nature Reviews Genetics, 2013 - nature.com
Heterosis, also known as hybrid vigour, is widespread in plants and animals, but the
molecular bases for this phenomenon remain elusive. Recent studies in hybrids and …