Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling

M Clarke, AJ Lohan, B Liu, I Lagkouvardos, S Roy… - Genome biology, 2013 - Springer
Abstract Background The Amoebozoa constitute one of the primary divisions of eukaryotes,
encompassing taxa of both biomedical and evolutionary importance, yet its genomic …

An update of DIVERGE software for functional divergence analysis of protein family

X Gu, Y Zou, Z Su, W Huang, Z Zhou… - Molecular biology …, 2013 - academic.oup.com
DIVERGE is a software system for phylogeny-based analyses of protein family evolution and
functional divergence. It provides a suite of statistical tools for selection and prioritization of …

Deep proteome profiling of Trichoplax adhaerens reveals remarkable features at the origin of metazoan multicellularity

JH Ringrose, HW Van Den Toorn, M Eitel… - Nature …, 2013 - nature.com
Genome sequencing of arguably the simplest known animal, Trichoplax adhaerens,
uncovered a rich array of transcription factor and signalling pathway genes. Although the …

Metazoan innovation: from aromatic amino acids to extracellular signaling

KM Kutchko, J Siltberg-Liberles - Amino Acids, 2013 - Springer
Tyrosine depletion in metazoan proteins was recently explained to be due to the
appearance of tyrosine kinases in Metazoa. Here, we present a complementary explanation …

G+ C content evolution in the human genome

W Li - eLS, 2013 - Wiley Online Library
The proportion of guanine (G) or cytosine (C) nucleotide bases in the human genome is
approximately 40%. Fluctuating relatively to this averaged G+ C content, there are large …

[PDF][PDF] Directional Selection on Tyrosine Frequences in Eukaryotes Versus Solvent Accessibility

S Pandya - 2013 - repository.arizona.edu
Amino acids are the building blocks of proteins, and the composition of those proteins plays
a major role in cell signaling. Recently, Tan et al. showed that the overall frequency of the …