[HTML][HTML] Developments in the tools and methodologies of synthetic biology
Synthetic biology is principally concerned with the rational design and engineering of
biologically based parts, devices, or systems. However, biological systems are generally …
biologically based parts, devices, or systems. However, biological systems are generally …
[HTML][HTML] Improving collaboration by standardization efforts in systems biology
A Dräger, BØ Palsson - Frontiers in bioengineering and …, 2014 - frontiersin.org
Collaborative genome-scale reconstruction endeavors of metabolic networks would not be
possible without a common, standardized formal representation of these systems. The ability …
possible without a common, standardized formal representation of these systems. The ability …
[HTML][HTML] COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
FT Bergmann, R Adams, S Moodie, J Cooper… - BMC …, 2014 - Springer
Background With the ever increasing use of computational models in the biosciences, the
need to share models and reproduce the results of published studies efficiently and easily is …
need to share models and reproduce the results of published studies efficiently and easily is …
[HTML][HTML] Community-driven development for computational biology at Sprints, Hackathons and Codefests
Background Computational biology comprises a wide range of technologies and
approaches. Multiple technologies can be combined to create more powerful workflows if …
approaches. Multiple technologies can be combined to create more powerful workflows if …
Directed acyclic graph-based technology mapping of genetic circuit models
As engineering foundations such as standards and abstraction begin to mature within
synthetic biology, it is vital that genetic design automation (GDA) tools be developed to …
synthetic biology, it is vital that genetic design automation (GDA) tools be developed to …
Composable modular models for synthetic biology
Modelling and computational simulation are crucial for the large-scale engineering of
biological circuits since they allow the system under design to be simulated prior to …
biological circuits since they allow the system under design to be simulated prior to …
A methodology to annotate systems biology markup language models with the synthetic biology open language
Recently, we have begun to witness the potential of synthetic biology, noted here in the form
of bacteria and yeast that have been genetically engineered to produce biofuels …
of bacteria and yeast that have been genetically engineered to produce biofuels …
[HTML][HTML] Parts & pools: a framework for modular design of synthetic gene circuits
MA Marchisio - Frontiers in Bioengineering and Biotechnology, 2014 - frontiersin.org
Published in 2008, Parts & Pools represents one of the first attempts to conceptualize the
modular design of bacterial synthetic gene circuits with Standard Biological Parts (DNA …
modular design of bacterial synthetic gene circuits with Standard Biological Parts (DNA …
A rule-based design specification language for synthetic biology
Synthetic Biology is an engineering discipline where parts of DNA sequences are composed
into novel, complex systems that execute a desired biological function. Functioning and well …
into novel, complex systems that execute a desired biological function. Functioning and well …
Synthetic nanocarriers as a new paradigm
FA Shiekh - Nanomedicine, 2014 - Taylor & Francis
Opinion Shiekh been explored to their full potential [34]. Importantly, a revolution in
nanotechnology is pushing personalized treatment closer than ever before to reality and …
nanotechnology is pushing personalized treatment closer than ever before to reality and …