Fragment-based lead discovery and design
D Joseph-McCarthy, AJ Campbell, G Kern… - Journal of chemical …, 2014 - ACS Publications
Fragment-based lead discovery and design has and continues to show increasing promise
in drug discovery. In this article, the current state of the art in terms of hot-spot …
in drug discovery. In this article, the current state of the art in terms of hot-spot …
Advances in multiparameter optimization methods for de novo drug design
M Segall - Expert opinion on drug discovery, 2014 - Taylor & Francis
Introduction: A high-quality drug must achieve a balance of physicochemical and absorption,
distribution, metabolism and elimination properties, safety and potency against its …
distribution, metabolism and elimination properties, safety and potency against its …
Rational design of topographical helix mimics as potent inhibitors of protein–protein interactions
Protein–protein interactions encompass large surface areas, but often a handful of key
residues dominate the binding energy landscape. Rationally designed small molecule …
residues dominate the binding energy landscape. Rationally designed small molecule …
Prediction of synthetic accessibility based on commercially available compound databases
Y Fukunishi, T Kurosawa, Y Mikami… - Journal of chemical …, 2014 - ACS Publications
A compound's synthetic accessibility (SA) is an important aspect of drug design, since in
some cases computer-designed compounds cannot be synthesized. There have been …
some cases computer-designed compounds cannot be synthesized. There have been …
Structure‐based design of inhibitors of the aspartic protease endothiapepsin by exploiting dynamic combinatorial chemistry
M Mondal, N Radeva, H Koester, A Park… - Angewandte Chemie …, 2014 - Wiley Online Library
Abstract Structure‐based design (SBD) can be used for the design and/or optimization of
new inhibitors for a biological target. Whereas de novo SBD is rarely used, most reports on …
new inhibitors for a biological target. Whereas de novo SBD is rarely used, most reports on …
De novo design of drug-like molecules by a fragment-based molecular evolutionary approach
This paper describes a similarity-driven simple evolutionary approach to producing
candidate molecules of new drugs. The aim of the method is to explore the candidates that …
candidate molecules of new drugs. The aim of the method is to explore the candidates that …
Automated design of realistic organometallic molecules from fragments
M Foscato, G Occhipinti, V Venkatraman… - Journal of Chemical …, 2014 - ACS Publications
A method for the automated generation of realistic, synthetically accessible transition metal
and organometallic complexes is described. Computational tools were designed to generate …
and organometallic complexes is described. Computational tools were designed to generate …
Differences in Conformational Dynamics between Plasmodium falciparum and Human Hsp90 Orthologues Enable the Structure-Based Discovery of Pathogen …
T Wang, WH Bisson, P Mäser… - Journal of medicinal …, 2014 - ACS Publications
The high sequence conservation of druggable pockets of closely related proteins can make
it challenging to develop selective inhibitors. We designed a new drug discovery approach …
it challenging to develop selective inhibitors. We designed a new drug discovery approach …
Molpher: a software framework for systematic chemical space exploration
Background Chemical space is virtual space occupied by all chemically meaningful organic
compounds. It is an important concept in contemporary chemoinformatics research, and its …
compounds. It is an important concept in contemporary chemoinformatics research, and its …
Development of a new de novo design algorithm for exploring chemical space
K Mishima, H Kaneko, K Funatsu - Molecular Informatics, 2014 - Wiley Online Library
In the first stage of development of new drugs, various lead compounds with high activity are
required. To design such compounds, we focus on chemical space defined by structural …
required. To design such compounds, we focus on chemical space defined by structural …