pENCODE: a plant encyclopedia of DNA elements

AK Lane, CE Niederhuth, L Ji… - Annual review of …, 2014 - annualreviews.org
ENCODE projects exist for many eukaryotes, including humans, but as of yet no defined
project exists for plants. A plant ENCODE would be invaluable to the research community …

New tools in the box: an evolutionary synopsis of chromatin insulators

P Heger, T Wiehe - Trends in Genetics, 2014 - cell.com
Despite progress in understanding genome organization and gene expression during the
last decade, the evolutionary pathways that led to the intricate patterns of gene expression in …

[HTML][HTML] Differential Acetylation of Histone H3 at the Regulatory Region of OsDREB1b Promoter Facilitates Chromatin Remodelling and Transcription Activation …

D Roy, A Paul, A Roy, R Ghosh, P Ganguly… - PLoS …, 2014 - journals.plos.org
The rice ortholog of DREB1, OsDREB1b, is transcriptionally induced by cold stress and over-
expression of OsDREB1b results in increase tolerance towards high salt and freezing stress …

Genome-wide view of TGFβ/Foxh1 regulation of the early mesendoderm program

WT Chiu, R Charney Le, IL Blitz, MB Fish, Y Li… - …, 2014 - journals.biologists.com
Nodal/TGFβ signaling regulates diverse biological responses. By combining RNA-seq on
Foxh1 and Nodal signaling loss-of-function embryos with ChIP-seq of Foxh1 and Smad2/3 …

[HTML][HTML] Differential genome evolution and speciation of Coix lacryma-jobi L. and Coix aquatica Roxb. hybrid guangxi revealed by repetitive sequence analysis and …

Z Cai, H Liu, Q He, M Pu, J Chen, J Lai, X Li, W Jin - BMC genomics, 2014 - Springer
Abstract Background Coix, Sorghum and Zea are closely related plant genera in the subtribe
Maydeae. Coix comprises 9–11 species with different ploidy levels (2n= 10, 20, 30, and 40) …

[HTML][HTML] Genome-wide nucleosome positioning is orchestrated by genomic regions associated with DNase I hypersensitivity in rice

Y Wu, W Zhang, J Jiang - PLoS Genetics, 2014 - journals.plos.org
Nucleosome positioning dictates the DNA accessibility for regulatory proteins, and thus is
critical for gene expression and regulation. It has been well documented that only a subset …

Open chromatin in plant genomes

W Zhang, T Zhang, Y Wu, J Jiang - Cytogenetic and Genome Research, 2014 - karger.com
Sensitivity to DNase I digestion is an indicator of the accessibility and configuration of
chromatin in eukaryotic genomes. Open chromatin exhibits high sensitivity to DNase I …

Transcription of nuclear organellar DNA in a model plant system

D Wang, Z Qu, DL Adelson, JK Zhu… - Genome biology and …, 2014 - academic.oup.com
Endosymbiotic gene transfer from cytoplasmic organelles (chloroplasts and mitochondria) to
the nucleus is an ongoing process in land plants. Although the frequency of organelle DNA …

着丝粒核小体结构研究进展

张韬, 杨足君 - 中国细胞生物学学报, 2014 - cqvip.com
着丝粒是构成真核生物染色体的必需元件. 在细胞有丝分裂或减数分裂时,
微管通过动粒与染色体着丝粒连接, 参与细胞分裂的染色体分离与分配过程 …

[PDF][PDF] Molecular studies of abiotic stress and abscisic acid mediated stress response pathway in barley

A Kamboj - 2014 - researchbank.swinburne.edu.au
Molecular studies of abiotic stress and abscisic acid mediated stress response pathway in
barley Page 1 i Molecular studies of abiotic stress and abscisic acid mediated stress response …