The 3D genome in transcriptional regulation and pluripotency
It can be convenient to think of the genome as simply a string of nucleotides, the linear order
of which encodes an organism's genetic blueprint. However, the genome does not exist as a …
of which encodes an organism's genetic blueprint. However, the genome does not exist as a …
Enhancer function: mechanistic and genome-wide insights come together
JL Plank, A Dean - Molecular cell, 2014 - cell.com
Enhancers establish spatial or temporal patterns of gene expression that are critical for
development, yet our understanding of how these DNA cis-regulatory elements function from …
development, yet our understanding of how these DNA cis-regulatory elements function from …
Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes
The pluripotent state of embryonic stem cells (ESCs) is produced by active transcription of
genes that control cell identity and repression of genes encoding lineage-specifying …
genes that control cell identity and repression of genes encoding lineage-specifying …
[HTML][HTML] CTCF haploinsufficiency destabilizes DNA methylation and predisposes to cancer
CJ Kemp, JM Moore, R Moser, B Bernard, M Teater… - Cell reports, 2014 - cell.com
Epigenetic alterations, particularly in DNA methylation, are ubiquitous in cancer, yet the
molecular origins and the consequences of these alterations are poorly understood. CTCF …
molecular origins and the consequences of these alterations are poorly understood. CTCF …
Architectural proteins: regulators of 3D genome organization in cell fate
E Gómez-Díaz, VG Corces - Trends in cell biology, 2014 - cell.com
The relation between alterations in chromatin structure and changes in gene expression
during cell differentiation has served as a paradigm to understand the link between genome …
during cell differentiation has served as a paradigm to understand the link between genome …
Specificity, propagation, and memory of pericentric heterochromatin
The cell establishes heritable patterns of active and silenced chromatin via interacting
factors that set, remove, and read epigenetic marks. To understand how the underlying …
factors that set, remove, and read epigenetic marks. To understand how the underlying …
The role of CCCTC-binding factor (CTCF) in genomic imprinting, development, and reproduction
CCCTC-binding factor (CTCF) is the major protein involved in insulator activity in
vertebrates, with widespread DNA binding sites in the genome. CTCF participates in many …
vertebrates, with widespread DNA binding sites in the genome. CTCF participates in many …
CTCF induces histone variant incorporation, erases the H3K27me3 histone mark and opens chromatin
O Weth, C Paprotka, K Günther, A Schulte… - Nucleic acids …, 2014 - academic.oup.com
Insulators functionally separate active chromatin domains from inactive ones. The insulator
factor, CTCF, has been found to bind to boundaries and to mediate insulator function. CTCF …
factor, CTCF, has been found to bind to boundaries and to mediate insulator function. CTCF …
A Functional Synonymous Coding Variant in the IL1RN Gene Is Associated with Survival in Septic Shock
Rationale: Death from infection is a highly heritable trait, yet there are few genetic variants
with known mechanism influencing survival during septic shock. Objectives: We …
with known mechanism influencing survival during septic shock. Objectives: We …
Architectural proteins CTCF and cohesin have distinct roles in modulating the higher order structure and expression of the CFTR locus
N Gosalia, D Neems, JL Kerschner… - Nucleic acids …, 2014 - academic.oup.com
Higher order chromatin structures across the genome are maintained in part by the
architectural proteins CCCTC binding factor (CTCF) and the cohesin complex, which co …
architectural proteins CCCTC binding factor (CTCF) and the cohesin complex, which co …