The 3D genome in transcriptional regulation and pluripotency

DU Gorkin, D Leung, B Ren - Cell stem cell, 2014 - cell.com
It can be convenient to think of the genome as simply a string of nucleotides, the linear order
of which encodes an organism's genetic blueprint. However, the genome does not exist as a …

Enhancer function: mechanistic and genome-wide insights come together

JL Plank, A Dean - Molecular cell, 2014 - cell.com
Enhancers establish spatial or temporal patterns of gene expression that are critical for
development, yet our understanding of how these DNA cis-regulatory elements function from …

Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes

JM Dowen, ZP Fan, D Hnisz, G Ren, BJ Abraham… - Cell, 2014 - cell.com
The pluripotent state of embryonic stem cells (ESCs) is produced by active transcription of
genes that control cell identity and repression of genes encoding lineage-specifying …

[HTML][HTML] CTCF haploinsufficiency destabilizes DNA methylation and predisposes to cancer

CJ Kemp, JM Moore, R Moser, B Bernard, M Teater… - Cell reports, 2014 - cell.com
Epigenetic alterations, particularly in DNA methylation, are ubiquitous in cancer, yet the
molecular origins and the consequences of these alterations are poorly understood. CTCF …

Architectural proteins: regulators of 3D genome organization in cell fate

E Gómez-Díaz, VG Corces - Trends in cell biology, 2014 - cell.com
The relation between alterations in chromatin structure and changes in gene expression
during cell differentiation has served as a paradigm to understand the link between genome …

Specificity, propagation, and memory of pericentric heterochromatin

K Müller‐Ott, F Erdel, A Matveeva, JP Mallm… - Molecular systems …, 2014 - embopress.org
The cell establishes heritable patterns of active and silenced chromatin via interacting
factors that set, remove, and read epigenetic marks. To understand how the underlying …

The role of CCCTC-binding factor (CTCF) in genomic imprinting, development, and reproduction

MM Franco, AR Prickett, RJ Oakey - Biology of reproduction, 2014 - academic.oup.com
CCCTC-binding factor (CTCF) is the major protein involved in insulator activity in
vertebrates, with widespread DNA binding sites in the genome. CTCF participates in many …

CTCF induces histone variant incorporation, erases the H3K27me3 histone mark and opens chromatin

O Weth, C Paprotka, K Günther, A Schulte… - Nucleic acids …, 2014 - academic.oup.com
Insulators functionally separate active chromatin domains from inactive ones. The insulator
factor, CTCF, has been found to bind to boundaries and to mediate insulator function. CTCF …

A Functional Synonymous Coding Variant in the IL1RN Gene Is Associated with Survival in Septic Shock

NJ Meyer, JF Ferguson, R Feng, F Wang… - American journal of …, 2014 - atsjournals.org
Rationale: Death from infection is a highly heritable trait, yet there are few genetic variants
with known mechanism influencing survival during septic shock. Objectives: We …

Architectural proteins CTCF and cohesin have distinct roles in modulating the higher order structure and expression of the CFTR locus

N Gosalia, D Neems, JL Kerschner… - Nucleic acids …, 2014 - academic.oup.com
Higher order chromatin structures across the genome are maintained in part by the
architectural proteins CCCTC binding factor (CTCF) and the cohesin complex, which co …