Ten years of pan-genome analyses
G Vernikos, D Medini, DR Riley, H Tettelin - Current opinion in …, 2015 - Elsevier
Highlights•Next generation sequencing technologies have enabled large-scale genome
analyses.•Pan-genome analyses provide a framework for predicting and modeling genomic …
analyses.•Pan-genome analyses provide a framework for predicting and modeling genomic …
A brief review of software tools for pangenomics
Since the proposal for pangenomic study, there have been a dozen software tools actively in
use for pangenomic analysis. By the end of 2014, Panseq and the pan-genomes analysis …
use for pangenomic analysis. By the end of 2014, Panseq and the pan-genomes analysis …
Inside the pan-genome-methods and software overview
L Carlos Guimaraes, L Benevides de Jesus… - Current …, 2015 - ingentaconnect.com
The number of genomes that have been deposited in databases has increased
exponentially after the advent of Next-Generation Sequencing (NGS), which produces high …
exponentially after the advent of Next-Generation Sequencing (NGS), which produces high …
[HTML][HTML] Divergences in gene repertoire among the reference Prevotella genomes derived from distinct body sites of human
VK Gupta, NM Chaudhari, S Iskepalli, C Dutta - BMC genomics, 2015 - Springer
Background The community composition of the human microbiome is known to vary at
distinct anatomical niches. But little is known about the nature of variations, if any, at the …
distinct anatomical niches. But little is known about the nature of variations, if any, at the …
The Dynamics of Genetic Interactions between Vibrio metoecus and Vibrio cholerae , Two Close Relatives Co-Occurring in the …
Vibrio metoecus is the closest relative of Vibrio cholerae, the causative agent of the potent
diarrheal disease cholera. Although the pathogenic potential of this new species is yet to be …
diarrheal disease cholera. Although the pathogenic potential of this new species is yet to be …
Polymerase chain reaction-based serotyping of pathogenic bacteria in food
JK Salazar, Y Wang, S Yu, H Wang, W Zhang - Journal of microbiological …, 2015 - Elsevier
Serotyping analysis of bacterial pathogens in food products is important for foodborne
disease surveillance and outbreak investigations. Traditional immunological techniques are …
disease surveillance and outbreak investigations. Traditional immunological techniques are …
[HTML][HTML] Genome comparison provides molecular insights into the phylogeny of the reassigned new genus Lysinibacillus
K Xu, Z Yuan, S Rayner, X Hu - BMC genomics, 2015 - Springer
Background Lysinibacillus sphaericus (formerly named Bacillus sphaericus) is incapable of
polysaccharide utilization and some isolates produce active insecticidal proteins against …
polysaccharide utilization and some isolates produce active insecticidal proteins against …
[HTML][HTML] Pan-Tetris: an interactive visualisation for Pan-genomes
A Hennig, J Bernhardt, K Nieselt - BMC bioinformatics, 2015 - Springer
Background Large-scale genome projects have paved the way to microbial pan-genome
analyses. Pan-genomes describe the union of all genes shared by all members of the …
analyses. Pan-genomes describe the union of all genes shared by all members of the …
Strategies to develop strain-specific PCR based assays for probiotics
P Treven - Beneficial Microbes, 2015 - wageningenacademic.com
Since health benefits conferred by probiotics are strain-specific, identification to the strain
level is mandatory to allow the monitoring of the presence and the abundance of specific …
level is mandatory to allow the monitoring of the presence and the abundance of specific …
Genomic Tools for the Study of Azospirillum and Other Plant Growth-Promoting Rhizobacteria
Bioinformatics tools are essential for extracting valuable biological knowledge from bacterial
genomes. Currently, there are many computational applications, algorithms, and programs …
genomes. Currently, there are many computational applications, algorithms, and programs …