Impacts of bioinformatics to medicinal chemistry

KC Chou - Medicinal chemistry, 2015 - ingentaconnect.com
Facing the explosive growth of biological sequence data, such as those of protein/peptide
and DNA/RNA, generated in the post-genomic age, many bioinformatical and mathematical …

The natural history of ADP-ribosyltransferases and the ADP-ribosylation system

L Aravind, D Zhang, RF de Souza, S Anand… - Endogenous ADP …, 2015 - Springer
Catalysis of NAD+-dependent ADP-ribosylation of proteins, nucleic acids, or small
molecules has evolved in at least three structurally unrelated superfamilies of enzymes …

CDD: NCBI's conserved domain database

A Marchler-Bauer, MK Derbyshire… - Nucleic acids …, 2015 - academic.oup.com
NCBI's CDD, the Conserved Domain Database, enters its 15th year as a public resource for
the annotation of proteins with the location of conserved domain footprints. Going forward …

NCBI BLAST+ integrated into Galaxy

PJA Cock, JM Chilton, B Grüning, JE Johnson… - …, 2015 - academic.oup.com
Abstract Background The NCBI BLAST suite has become ubiquitous in modern molecular
biology and is used for small tasks such as checking capillary sequencing results of single …

iUbiq-Lys: prediction of lysine ubiquitination sites in proteins by extracting sequence evolution information via a gray system model

WR Qiu, X Xiao, WZ Lin, KC Chou - Journal of Biomolecular …, 2015 - Taylor & Francis
As one of the most important posttranslational modifications (PTMs), ubiquitination plays an
important role in regulating varieties of biological processes, such as signal transduction …

Identification of microRNA precursor with the degenerate K-tuple or Kmer strategy

B Liu, L Fang, S Wang, X Wang, H Li… - Journal of theoretical …, 2015 - Elsevier
The microRNA (miRNA), a small non-coding RNA molecule, plays an important role in
transcriptional and post-transcriptional regulation of gene expression. Its abnormal …

[HTML][HTML] The ocean sampling day consortium

A Kopf, M Bicak, R Kottmann, J Schnetzer, I Kostadinov… - Gigascience, 2015 - Springer
Abstract Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …

Diversity and dynamics of bacteriocins from human microbiome

J Zheng, MG Gänzle, XB Lin, L Ruan… - Environmental …, 2015 - Wiley Online Library
Human commensal microbiota are an important determinant of health and disease of the
host. Different human body sites harbour different bacterial microbiota, bacterial …

[HTML][HTML] The genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families

EM Schwarz, Y Hu, I Antoshechkin, MM Miller… - Nature …, 2015 - nature.com
Hookworms infect over 400 million people, stunting and impoverishing them,,. Sequencing
hookworm genomes and finding which genes they express during infection should help in …

[HTML][HTML] Genome sequence of African swine fever virus BA71, the virulent parental strain of the nonpathogenic and tissue-culture adapted BA71V

JM Rodríguez, LT Moreno, A Alejo, A Lacasta… - PloS one, 2015 - journals.plos.org
The strain BA71V has played a key role in African swine fever virus (ASFV) research. It was
the first genome sequenced, and remains the only genome completely determined. A large …