The Landscape of long noncoding RNA classification

GS Laurent, C Wahlestedt, P Kapranov - Trends in genetics, 2015 - cell.com
Advances in the depth and quality of transcriptome sequencing have revealed many new
classes of long noncoding RNAs (lncRNAs). lncRNA classification has mushroomed to …

The selection and function of cell type-specific enhancers

S Heinz, CE Romanoski, C Benner… - Nature reviews Molecular …, 2015 - nature.com
The human body contains several hundred cell types, all of which share the same genome.
In metazoans, much of the regulatory code that drives cell type-specific gene expression is …

RNA-mediated epigenetic regulation of gene expression

D Holoch, D Moazed - Nature Reviews Genetics, 2015 - nature.com
Diverse classes of RNA, ranging from small to long non-coding RNAs, have emerged as key
regulators of gene expression, genome stability and defence against foreign genetic …

[HTML][HTML] Activity-induced DNA breaks govern the expression of neuronal early-response genes

R Madabhushi, F Gao, AR Pfenning, L Pan… - Cell, 2015 - cell.com
Neuronal activity causes the rapid expression of immediate early genes that are crucial for
experience-driven changes to synapses, learning, and memory. Here, using both molecular …

Epigenomic signatures of neuronal diversity in the mammalian brain

A Mo, EA Mukamel, FP Davis, C Luo, GL Henry… - Neuron, 2015 - cell.com
Neuronal diversity is essential for mammalian brain function but poses a challenge to
molecular profiling. To address the need for tools that facilitate cell-type-specific epigenomic …

Long noncoding RNAs in cardiovascular diseases

S Uchida, S Dimmeler - Circulation research, 2015 - Am Heart Assoc
In recent year, increasing evidence suggests that noncoding RNAs play important roles in
the regulation of tissue homeostasis and pathophysiological conditions. Besides small …

Enhancer evolution across 20 mammalian species

D Villar, C Berthelot, S Aldridge, TF Rayner, M Lukk… - Cell, 2015 - cell.com
The mammalian radiation has corresponded with rapid changes in noncoding regions of the
genome, but we lack a comprehensive understanding of regulatory evolution in mammals …

Transcription factor trapping by RNA in gene regulatory elements

AA Sigova, BJ Abraham, X Ji, B Molinie, NM Hannett… - Science, 2015 - science.org
Transcription factors (TFs) bind specific sequences in promoter-proximal and-distal DNA
elements to regulate gene transcription. RNA is transcribed from both of these DNA …

Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer's disease

E Gjoneska, AR Pfenning, H Mathys, G Quon… - Nature, 2015 - nature.com
Alzheimer's disease (AD) is a severe age-related neurodegenerative disorder characterized
by accumulation of amyloid-β plaques and neurofibrillary tangles, synaptic and neuronal …

Disruption of DNA-methylation-dependent long gene repression in Rett syndrome

HW Gabel, B Kinde, H Stroud, CS Gilbert, DA Harmin… - Nature, 2015 - nature.com
Disruption of the MECP2 gene leads to Rett syndrome (RTT), a severe neurological disorder
with features of autism. MECP2 encodes a methyl-DNA-binding protein that has been …