Yak whole-genome resequencing reveals domestication signatures and prehistoric population expansions

Q Qiu, L Wang, K Wang, Y Yang, T Ma, Z Wang… - Nature …, 2015 - nature.com
Yak domestication represents an important episode in the early human occupation of the
high-altitude Qinghai-Tibet Plateau (QTP). The precise timing of domestication is debated …

Genome-wide study of structural variants in bovine Holstein, Montbéliarde and Normande dairy breeds

M Boussaha, D Esquerré, J Barbieri, A Djari, A Pinton… - PloS one, 2015 - journals.plos.org
High-throughput sequencing technologies have offered in recent years new opportunities to
study genome variations. These studies have mostly focused on single nucleotide …

[HTML][HTML] Whole-genome resequencing analysis of Hanwoo and Yanbian cattle to identify genome-wide SNPs and signatures of selection

JW Choi, BH Choi, SH Lee, SS Lee, HC Kim, D Yu… - Molecules and cells, 2015 - Elsevier
Over the last 30 years, Hanwoo has been selectively bred to improve economically
important traits. Hanwoo is currently the representative Korean native beef cattle breed, and …

Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes

A Das, F Panitz, VR Gregersen, C Bendixen, LE Holm - BMC genomics, 2015 - Springer
Background Over the last few years, continuous development of high-throughput
sequencing platforms and sequence analysis tools has facilitated reliable identification and …

Single nucleotide variant detection in Jaffrabadi buffalo (Bubalus bubalis) using high-throughput targeted sequencing

MR Upadhyay, AB Patel, RB Subramanian… - Frontiers in Life …, 2015 - Taylor & Francis
The water buffalo is among the most important livestock species of southern Asia,
contributing greatly to the ecosystem and rural livelihood of the region. The identification of …

Perfect hashing structures for parallel similarity searches

TT Tran, M Giraud, JS Varré - 2015 IEEE International Parallel …, 2015 - ieeexplore.ieee.org
Seed-based heuristics have proved to be efficient for studying similarity between genetic
databases with billions of base pairs. This paper focuses on algorithms and data structures …

[PDF][PDF] Biological effects of the growth hormone gene polymorphism in the American mink (Neovison vison Schreb., 1777)-does synonymous always mean silent?

JJ Skorupski, M Kmiec - JAPS: Journal of Animal & Plant Sciences, 2015 - academia.edu
Most often, genetic variation causing phenotypical changes is calculated exclusively upon
the occurrence of nonsynonymous variation. However, it has been increasingly more …

Adaptive divergence in the bovine genome

W Barendse, S McWilliam, RJ Bunch, BE Harrison - bioRxiv, 2015 - biorxiv.org
Cattle diverged during the Pleistocene into two subspecies, one in temperate and one in
tropical environments. Here we have used next generation sequencing of the indicine …

Die Analyse von genomweiten Re-Sequenzierungsdaten zur Identifizierung kausaler DNA-Variation beim Rind

S Kipp - 2015 - mediatum.ub.tum.de
Ziel dieser Arbeit war die Genom-Re-Sequenzierung von Gründertieren verschiedener
Rinderpopulationen und die damit verbundene zuverlässige Aufdeckung der genomischen …

[PDF][PDF] Framework for High-Throughput Identification of Genomic Variants in Buffaloes

AB Patel, H Padh, CG Joshi, RB Subramanian - researchgate.net
The genetic improvement in livestock can be achieved through, i) selection and/through, ii)
cross breeding. Conventional selection requires long time span and accurate performance …