Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

T Zhang, Y Hu, W Jiang, L Fang, X Guan, J Chen… - Nature …, 2015 - nature.com
Upland cotton is a model for polyploid crop domestication and transgenic improvement.
Here we sequenced the allotetraploid Gossypium hirsutum L. acc. TM-1 genome by …

Beyond the thale: comparative genomics and genetics of Arabidopsis relatives

D Koenig, D Weigel - Nature Reviews Genetics, 2015 - nature.com
For decades a small number of model species have rightly occupied a privileged position in
laboratory experiments, but it is becoming increasingly clear that our knowledge of biology is …

Disruption of a CAROTENOID CLEAVAGE DIOXYGENASE 4 gene converts flower colour from white to yellow in Brassica species

B Zhang, C Liu, Y Wang, X Yao, F Wang, J Wu… - New …, 2015 - Wiley Online Library
In Brassica napus, yellow petals had a much higher content of carotenoids than white petals
present in a small number of lines, with violaxanthin identified as the major carotenoid …

Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation

EM Willing, V Rawat, T Mandáková, F Maumus… - Nature plants, 2015 - nature.com
Despite evolutionary conserved mechanisms to silence transposable element activity, there
are drastic differences in the abundance of transposable elements even among closely …

Recent progress in the use of 'omics technologies in brassicaceous vegetables

K Witzel, S Neugart, S Ruppel, M Schreiner… - Frontiers in plant …, 2015 - frontiersin.org
Continuing advances in 'omics methodologies and instrumentation is enhancing the
understanding of how plants cope with the dynamic nature of their growing …

A draft genome of field pennycress (Thlaspi arvense) provides tools for the domestication of a new winter biofuel crop

KM Dorn, JD Fankhauser, DL Wyse, MD Marks - Dna research, 2015 - academic.oup.com
Field pennycress (Thlaspi arvense L.) is being domesticated as a new winter cover crop and
biofuel species for the Midwestern United States that can be double-cropped between corn …

Genome-wide SNP identification and QTL mapping for black rot resistance in cabbage

J Lee, NK Izzah, M Jayakodi, S Perumal, HJ Joh… - BMC plant biology, 2015 - Springer
Background Black rot is a destructive bacterial disease causing large yield and quality
losses in Brassica oleracea. To detect quantitative trait loci (QTL) for black rot resistance, we …

Biofortification of oilseed Brassica juncea with the anti-cancer compound glucoraphanin by suppressing GSL-ALK gene family

R Augustine, NC Bisht - Scientific reports, 2015 - nature.com
Glucosinolates are amino acids derived secondary metabolites, invariably present in
Brassicales, which have huge health and agricultural benefits. Sulphoraphane, the …

Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data

V Rawat, A Abdelsamad, B Pietzenuk, DK Seymour… - PloS one, 2015 - journals.plos.org
Gene model annotations are important community resources that ensure comparability and
reproducibility of analyses and are typically the first step for functional annotation of genomic …

[HTML][HTML] The power of single molecule real-time sequencing technology in the de novo assembly of a eukaryotic genome

H Sakai, K Naito, E Ogiso-Tanaka, Y Takahashi… - Scientific reports, 2015 - nature.com
Second-generation sequencers (SGS) have been game-changing, achieving cost-effective
whole genome sequencing in many non-model organisms. However, a large portion of the …