Network-assisted crop systems genetics: network inference and integrative analysis

T Lee, H Kim, I Lee - Current opinion in plant biology, 2015 - Elsevier
Highlights•Networks facilitate gene-to-phenotype mapping by gene prioritization and GWAS
data analysis.•Network-assisted crop systems genetics require genome-scale functional …

Transcriptional regulatory network analysis of MYB transcription factor family genes in rice

S Smita, A Katiyar, V Chinnusamy… - Frontiers in plant …, 2015 - frontiersin.org
MYB transcription factor (TF) is one of the largest TF families and regulates defense
responses to various stresses, hormone signaling as well as many metabolic and …

New candidate genes for the fine regulation of the colour of grapes

L Costantini, G Malacarne, S Lorenzi… - Journal of …, 2015 - academic.oup.com
In the last decade, great progress has been made in clarifying the main determinants of
anthocyanin accumulation in grape berry skin. However, the molecular details of the fine …

Regulation of flavonol content and composition in (Syrah× Pinot Noir) mature grapes: integration of transcriptional profiling and metabolic quantitative trait locus …

G Malacarne, L Costantini, E Coller… - Journal of …, 2015 - academic.oup.com
Flavonols are a ubiquitous class of flavonoids that accumulate preferentially in flowers and
mature berries. Besides their photo-protective function, they play a fundamental role during …

New insights into the evolutionary history of plant sorbitol dehydrogenase

Y Jia, DCJ Wong, C Sweetman, JB Bruning, CM Ford - BMC plant biology, 2015 - Springer
Abstract Background Sorbitol dehydrogenase (SDH, EC 1.1. 1.14) is the key enzyme
involved in sorbitol metabolism in higher plants. SDH genes in some Rosaceae species …

A co-expression gene network associated with developmental regulation of apple fruit acidity

Y Bai, L Dougherty, L Cheng, K Xu - Molecular genetics and genomics, 2015 - Springer
Apple fruit acidity, which affects the fruit's overall taste and flavor to a large extent, is
primarily determined by the concentration of malic acid. Previous studies demonstrated that …

ImmuCo: a database of gene co-expression in immune cells

P Wang, H Qi, S Song, S Li, N Huang… - Nucleic acids …, 2015 - academic.oup.com
Current gene co-expression databases and correlation networks do not support cell-specific
analysis. Gene co-expression and expression correlation are subtly different phenomena …

A knowledge base for Vitis vinifera functional analysis

A Pulvirenti, R Giugno, R Distefano, G Pigola… - BMC systems …, 2015 - Springer
Abstract Background Vitis vinifera (Grapevine) is the most important fruit species in the
modern world. Wine and table grapes sales contribute significantly to the economy of major …

Genes de resistência a patógenos em feijão-caupi e em outras leguminosas: caracterização e diversidade

FT ARAÚJO - 2015 - repositorio.ufpe.br
A cultura do feijão-caupi [Vigna unguiculata (L.) Walp.] apresenta importância econômica
em nível internacional, entretanto ela é frequentemente acometida por uma diversidade de …

Role of cysteine-rich proteins in the assembly of the spore surface layers in the intestinal pathogen Chlostridium difficile

CA Feliciano - 2015 - repositorio.ul.pt
Clostridium difficile is currently the main cause of intestinal nosocomial disease associated
with antibiotic therapy in adults, and a growing concern in the community. C. difficile is a …