Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets

NT Schirle, J Sheu-Gruttadauria, SD Chandradoss… - Elife, 2015 - elifesciences.org
MicroRNAs (miRNAs) direct post-transcriptional regulation of human genes by guiding
Argonaute proteins to complementary sites in messenger RNAs (mRNAs) targeted for …

A flexible extension of the Drosophila ultrabithorax homeodomain defines a novel Hox/PBC interaction mode

N Foos, C Maurel-Zaffran, MJ Mate, R Vincentelli… - Structure, 2015 - cell.com
The patterning function of Hox proteins relies on assembling protein complexes with PBC
proteins, which often involves a protein motif found in most Hox proteins, the so-called …

A novel strategy to analyze l-tryptophan through allosteric Trp repressor based on rolling circle amplification

G Zhao, T Hu, J Li, H Wei, H Shang, Y Guan - Biosensors and …, 2015 - Elsevier
Rolling circle amplification (RCA) has been considered as a powerful tool for nucleic acids
detection. Here, a novel repressor-RCA-based method for l-tryptophan (l-Trp) detection was …

Large-Scale Quantitative Assessment of Binding Preferences in Protein–Nucleic Acid Complexes

D Jakubec, J Hostas, RA Laskowski… - Journal of Chemical …, 2015 - ACS Publications
The growing number of high-quality experimental (X-ray, NMR) structures of protein–DNA
complexes has sufficient enough information to assess whether universal rules governing …

Concentration-dependent effects on fully hydrated DNA at terahertz frequencies

P Glancy - Journal of biological physics, 2015 - Springer
Using terahertz time-domain spectroscopy (THz-TDS), the frequency-dependent dielectric
constant of deoxyribonucleic acid (DNA) in solution was measured. The response of the …

Computational inference of genome-wide protein-DNA interactions using high-throughput genomic data

J Zhong - 2015 - search.proquest.com
Transcriptional regulation has been studied intensively in recent decades. One important
aspect of this regulation is the interaction between regulatory proteins, such as transcription …

X-ray crystallographic analyses of archaeal DNA binding proteins TrmBL2 and TrmB

MUD Ahmad - 2015 - kops.uni-konstanz.de
In archaea, packaging of DNA into chromatin and transcriptional regulation are closely
related processes and the proteins involved therein often exhibit overlapping roles. In case …

Understanding Conformational Dynamics in E. Coli Protein Tryptophan Repressor

B Harish - 2015 - dataspace.princeton.edu
E. coli protein tryptophan repressor (TrpR) regulates expression of tryptophan biosynthetic
genes in response to the intracellular concentration of L-tryptophan (L-trp). The binding of L …

[PDF][PDF] Computational methods for dissecting transcription regulatory networks

SO Klishami - 2015 - edoc.unibas.ch
Gene expression is regulated on many levels of which transcription regulation is the most
studied. Transcription factors (TF) arguably are the most integral part of transcriptional …

Peptide-based Molecular Motor Design

L SMALL, R SIOBHAN - 2015 - etheses.dur.ac.uk
This thesis concerns the use of dimeric coiled-coil peptides as components for synthetic
protein motors. Studies of the hub structures of two motor designs are described. Firstly, I …