Predicting protein–protein interactions from the molecular to the proteome level
Identification of protein–protein interactions (PPIs) is at the center of molecular biology
considering the unquestionable role of proteins in cells. Combinatorial interactions result in …
considering the unquestionable role of proteins in cells. Combinatorial interactions result in …
Recent structural insights into cytochrome P450 function
FP Guengerich, MR Waterman, M Egli - Trends in pharmacological …, 2016 - cell.com
Cytochrome P450 (P450) enzymes are important in the metabolism of drugs, steroids, fat-
soluble vitamins, carcinogens, pesticides, and many other types of chemicals. Their catalytic …
soluble vitamins, carcinogens, pesticides, and many other types of chemicals. Their catalytic …
[HTML][HTML] The HADDOCK2. 2 web server: user-friendly integrative modeling of biomolecular complexes
The prediction of the quaternary structure of biomolecular macromolecules is of paramount
importance for fundamental understanding of cellular processes and drug design. In the era …
importance for fundamental understanding of cellular processes and drug design. In the era …
PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex
A Lamiable, P Thévenet, J Rey, M Vavrusa… - Nucleic acids …, 2016 - academic.oup.com
Abstract Structure determination of linear peptides of 5–50 amino acids in aqueous solution
and interacting with proteins is a key aspect in structural biology. PEP-FOLD3 is a novel …
and interacting with proteins is a key aspect in structural biology. PEP-FOLD3 is a novel …
Interactions of a fungal lytic polysaccharide monooxygenase with β-glucan substrates and cellobiose dehydrogenase
G Courtade, R Wimmer, ÅK Røhr… - Proceedings of the …, 2016 - National Acad Sciences
Lytic polysaccharide monooxygenases (LPMOs) are copper-dependent enzymes that
catalyze oxidative cleavage of glycosidic bonds using molecular oxygen and an external …
catalyze oxidative cleavage of glycosidic bonds using molecular oxygen and an external …
[HTML][HTML] Deregulation of mitochondrial F1FO-ATP synthase via OSCP in Alzheimer's disease
SJ Beck, L Guo, A Phensy, J Tian, L Wang… - Nature …, 2016 - nature.com
Abstract F1FO-ATP synthase is critical for mitochondrial functions. The deregulation of this
enzyme results in dampened mitochondrial oxidative phosphorylation (OXPHOS) and …
enzyme results in dampened mitochondrial oxidative phosphorylation (OXPHOS) and …
[HTML][HTML] Engineering the surface properties of a human monoclonal antibody prevents self-association and rapid clearance in vivo
CL Dobson, PWA Devine, JJ Phillips, DR Higazi… - Scientific reports, 2016 - nature.com
Uncontrolled self-association is a major challenge in the exploitation of proteins as
therapeutics. Here we describe the development of a structural proteomics approach to …
therapeutics. Here we describe the development of a structural proteomics approach to …
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment
MF Lensink, S Velankar… - Proteins: Structure …, 2016 - Wiley Online Library
We present the results for CAPRI Round 30, the first joint CASP‐CAPRI experiment, which
brought together experts from the protein structure prediction and protein–protein docking …
brought together experts from the protein structure prediction and protein–protein docking …
[HTML][HTML] Spatiotemporal variation of mammalian protein complex stoichiometries
Background Recent large-scale studies revealed cell-type specific proteomes. However,
protein complexes, the basic functional modules of a cell, have been so far mostly …
protein complexes, the basic functional modules of a cell, have been so far mostly …
[HTML][HTML] In silico selection of an aptamer to estrogen receptor alpha using computational docking employing estrogen response elements as aptamer-alike molecules
Aptamers, the chemical-antibody substitute to conventional antibodies, are primarily
discovered through SELEX technology involving multi-round selections and enrichment …
discovered through SELEX technology involving multi-round selections and enrichment …