Computer aided drug design: success and limitations

M Hassan Baig, K Ahmad, S Roy… - Current …, 2016 - ingentaconnect.com
Over the last few decades, computer-aided drug design has emerged as a powerful
technique playing a crucial role in the development of new drug molecules. Structure-based …

Getting the most out of PubChem for virtual screening

S Kim - Expert opinion on drug discovery, 2016 - Taylor & Francis
Introduction: With the emergence of the 'big data'era, the biomedical research community
has great interest in exploiting publicly available chemical information for drug discovery …

μ Opioid receptor: novel antagonists and structural modeling

T Kaserer, A Lantero, H Schmidhammer, M Spetea… - Scientific reports, 2016 - nature.com
The μ opioid receptor (MOR) is a prominent member of the G protein-coupled receptor family
and the molecular target of morphine and other opioid drugs. Despite the long tradition of …

Discovery of a selective aurora a kinase inhibitor by virtual screening

F Kilchmann, MJ Marcaida, S Kotak… - Journal of medicinal …, 2016 - ACS Publications
Here we report the discovery of a selective inhibitor of Aurora A, a key regulator of cell
division and potential anticancer target. We used the atom category extended ligand overlap …

Integrated computational approach for virtual hit identification against ebola viral proteins VP35 and VP40

MU Mirza, N Ikram - International journal of molecular sciences, 2016 - mdpi.com
The Ebola virus (EBOV) has been recognised for nearly 40 years, with the most recent
EBOV outbreak being in West Africa, where it created a humanitarian crisis. Mortalities …

Identification of estrogen receptor α ligands with virtual screening techniques

SP Niinivehmas, E Manivannan, S Rauhamäki… - Journal of Molecular …, 2016 - Elsevier
Utilization of computer-aided molecular discovery methods in virtual screening (VS) is a cost-
effective approach to identify novel bioactive small molecules. Unfortunately, no universal …

Application of shape similarity in pose selection and virtual screening in CSARdock2014 exercise

A Kumar, KYJ Zhang - Journal of Chemical Information and …, 2016 - ACS Publications
To evaluate the applicability of shape similarity in docking-based pose selection and virtual
screening, we participated in the CSARdock2014 benchmark exercise for identifying the …

Computational allosteric ligand binding site identification on Ras proteins

M McCarthy, P Prakash, AA Gorfe - Acta biochimica et …, 2016 - academic.oup.com
A number of computational techniques have been proposed to expedite the process of
allosteric ligand binding site identification in inherently flexible and hence challenging drug …

Knowledge-based methods to train and optimize virtual screening ensembles

RV Swift, SA Jusoh, TL Offutt, ES Li… - Journal of chemical …, 2016 - ACS Publications
Ensemble docking can be a successful virtual screening technique that addresses the
innate conformational heterogeneity of macromolecular drug targets. Yet, lacking a method …

Modern approaches to accelerate discovery of new antischistosomal drugs

BJ Neves, E Muratov, RB Machado… - Expert opinion on …, 2016 - Taylor & Francis
Introduction: The almost exclusive use of only praziquantel for the treatment of
schistosomiasis has raised concerns about the possible emergence of drug-resistant …