Chloroplast genomes: diversity, evolution, and applications in genetic engineering

H Daniell, CS Lin, M Yu, WJ Chang - Genome biology, 2016 - Springer
Chloroplasts play a crucial role in sustaining life on earth. The availability of over 800
sequenced chloroplast genomes from a variety of land plants has enhanced our …

A tale of two sugars: trehalose 6-phosphate and sucrose

CM Figueroa, JE Lunn - Plant physiology, 2016 - academic.oup.com
Abstract Trehalose 6-phosphate (Tre6P), the intermediate of trehalose biosynthesis, is an
essential signal metabolite in plants, linking growth and development to carbon status. The …

Evolution of plant genome architecture

JF Wendel, SA Jackson, BC Meyers, RA Wing - Genome biology, 2016 - Springer
We have witnessed an explosion in our understanding of the evolution and structure of plant
genomes in recent years. Here, we highlight three important emergent realizations:(1) that …

Characterization of a recently evolved flavonol-phenylacyltransferase gene provides signatures of natural light selection in Brassicaceae

T Tohge, R Wendenburg, H Ishihara… - Nature …, 2016 - nature.com
Incidence of natural light stress renders it important to enhance our understanding of the
mechanisms by which plants protect themselves from harmful effects of UV-B irradiation, as …

[HTML][HTML] GREENC: a Wiki-based database of plant lncRNAs

AP Gallart, AH Pulido, IAM de Lagrán… - Nucleic acids …, 2016 - ncbi.nlm.nih.gov
Long non-coding RNAs (lncRNAs) are functional non-translated molecules greater than 200
nt. Their roles are diverse and they are usually involved in transcriptional regulation …

GREENC: a Wiki-based database of plant lncRNAs

A Paytuví Gallart, A Hermoso Pulido… - Nucleic acids …, 2016 - academic.oup.com
Long non-coding RNAs (lncRNAs) are functional non-translated molecules greater than 200
nt. Their roles are diverse and they are usually involved in transcriptional regulation …

Evolutionary dynamics of the leucine-rich repeat receptor-like kinase (LRR-RLK) subfamily in angiosperms

I Fischer, A Diévart, G Droc, JF Dufayard… - Plant …, 2016 - academic.oup.com
Gene duplications are an important factor in plant evolution, and lineage-specific expanded
(LSE) genes are of particular interest. Receptor-like kinases expanded massively in land …

Biogeography and diversification of Brassicales: a 103 million year tale

WM Cardinal-McTeague, KJ Sytsma, JC Hall - … Phylogenetics and Evolution, 2016 - Elsevier
Brassicales is a diverse order perhaps most famous because it houses Brassicaceae and,
its premier member, Arabidopsis thaliana. This widely distributed and species-rich lineage …

What makes up plant genomes: The vanishing line between transposable elements and genes

D Zhao, AA Ferguson, N Jiang - Biochimica et Biophysica Acta (BBA)-Gene …, 2016 - Elsevier
The ultimate source of evolution is mutation. As the largest component in plant genomes,
transposable elements (TEs) create numerous types of mutations that cannot be mimicked …

Comparative analysis of GC content variations in plant genomes

R Singh, R Ming, Q Yu - Tropical Plant Biology, 2016 - Springer
The GC content, one of the important compositional features of the genome, varies
significantly among different genomes and different regions within a genome. Identifying the …