Fungal DNA barcoding

J Xu - Genome, 2016 - cdnsciencepub.com
Fungi are ubiquitous in both natural and human-made environments. They play important
roles in the health of plants, animals, and humans, and in broad ecosystem functions. Thus …

Sequence-based classification and identification of Fungi

D Hibbett, K Abarenkov, U Kõljalg, M Öpik, B Chai… - Mycologia, 2016 - Taylor & Francis
Fungal taxonomy and ecology have been revolutionized by the application of molecular
methods and both have increasing connections to genomics and functional biology …

FUNGuild: an open annotation tool for parsing fungal community datasets by ecological guild

NH Nguyen, Z Song, ST Bates, S Branco, L Tedersoo… - Fungal ecology, 2016 - Elsevier
Fungi typically live in highly diverse communities composed of multiple ecological guilds.
Although high-throughput sequencing has greatly increased the ability to quantify the …

DNA barcoding analysis of more than 9 000 yeast isolates contributes to quantitative thresholds for yeast species and genera delimitation

D Vu, M Groenewald, S Szöke, G Cardinali… - Studies in …, 2016 - ingentaconnect.com
DNA barcoding is a global initiative for species identification through sequencing of short
DNA sequence markers. Sequences of two loci, ITS and LSU, were generated as barcode …

Species-level para-and polyphyly in DNA barcode gene trees: strong operational bias in European Lepidoptera

M Mutanen, SM Kivelä, RA Vos… - Systematic …, 2016 - academic.oup.com
The proliferation of DNA data is revolutionizing all fields of systematic research. DNA
barcode sequences, now available for millions of specimens and several hundred thousand …

DNA barcoding of fungi causing infections in humans and animals

L Irinyi, M Lackner, GS De Hoog, W Meyer - Fungal biology, 2016 - Elsevier
Correct species identification is becoming increasingly important in clinical diagnostics. Till
now, many mycological laboratories rely on conventional phenotypic identification. But this …

Strategies to improve usability and preserve accuracy in biological sequence databases

J Bengtsson‐Palme, F Boulund, R Edström… - …, 2016 - Wiley Online Library
Biology is increasingly dependent on large‐scale analysis, such as proteomics, creating a
requirement for efficient bioinformatics. Bioinformatic predictions of biological functions rely …

From GenBank to GBIF: phylogeny-based predictive niche modeling tests accuracy of taxonomic identifications in large occurrence data repositories

BE Smith, MK Johnston, R Luecking - PloS one, 2016 - journals.plos.org
Accuracy of taxonomic identifications is crucial to data quality in online repositories of
species occurrence data, such as the Global Biodiversity Information Facility (GBIF), which …

Systematics, taxonomy and species names: Do they matter?

MA Borowitzka - The physiology of microalgae, 2016 - Springer
The species name is a shorthand identifier for a taxonomic entity and provides an important
information retrieval tool, even more so in this age of electronic on-line searching and large …

Future perspectives and challenges of fungal systematics in the age of big data

Z Wang, RH Nilsson, TY James, Y Dai… - Biology of microfungi, 2016 - Springer
Mycological research, especially research on fungal evolution and ecology, requires a
robust and detailed fungal classification and phylogeny to facilitate efficient and informative …