Fungal DNA barcoding
J Xu - Genome, 2016 - cdnsciencepub.com
Fungi are ubiquitous in both natural and human-made environments. They play important
roles in the health of plants, animals, and humans, and in broad ecosystem functions. Thus …
roles in the health of plants, animals, and humans, and in broad ecosystem functions. Thus …
Sequence-based classification and identification of Fungi
Fungal taxonomy and ecology have been revolutionized by the application of molecular
methods and both have increasing connections to genomics and functional biology …
methods and both have increasing connections to genomics and functional biology …
FUNGuild: an open annotation tool for parsing fungal community datasets by ecological guild
Fungi typically live in highly diverse communities composed of multiple ecological guilds.
Although high-throughput sequencing has greatly increased the ability to quantify the …
Although high-throughput sequencing has greatly increased the ability to quantify the …
DNA barcoding analysis of more than 9 000 yeast isolates contributes to quantitative thresholds for yeast species and genera delimitation
DNA barcoding is a global initiative for species identification through sequencing of short
DNA sequence markers. Sequences of two loci, ITS and LSU, were generated as barcode …
DNA sequence markers. Sequences of two loci, ITS and LSU, were generated as barcode …
Species-level para-and polyphyly in DNA barcode gene trees: strong operational bias in European Lepidoptera
The proliferation of DNA data is revolutionizing all fields of systematic research. DNA
barcode sequences, now available for millions of specimens and several hundred thousand …
barcode sequences, now available for millions of specimens and several hundred thousand …
DNA barcoding of fungi causing infections in humans and animals
Correct species identification is becoming increasingly important in clinical diagnostics. Till
now, many mycological laboratories rely on conventional phenotypic identification. But this …
now, many mycological laboratories rely on conventional phenotypic identification. But this …
Strategies to improve usability and preserve accuracy in biological sequence databases
J Bengtsson‐Palme, F Boulund, R Edström… - …, 2016 - Wiley Online Library
Biology is increasingly dependent on large‐scale analysis, such as proteomics, creating a
requirement for efficient bioinformatics. Bioinformatic predictions of biological functions rely …
requirement for efficient bioinformatics. Bioinformatic predictions of biological functions rely …
From GenBank to GBIF: phylogeny-based predictive niche modeling tests accuracy of taxonomic identifications in large occurrence data repositories
BE Smith, MK Johnston, R Luecking - PloS one, 2016 - journals.plos.org
Accuracy of taxonomic identifications is crucial to data quality in online repositories of
species occurrence data, such as the Global Biodiversity Information Facility (GBIF), which …
species occurrence data, such as the Global Biodiversity Information Facility (GBIF), which …
Systematics, taxonomy and species names: Do they matter?
MA Borowitzka - The physiology of microalgae, 2016 - Springer
The species name is a shorthand identifier for a taxonomic entity and provides an important
information retrieval tool, even more so in this age of electronic on-line searching and large …
information retrieval tool, even more so in this age of electronic on-line searching and large …
Future perspectives and challenges of fungal systematics in the age of big data
Mycological research, especially research on fungal evolution and ecology, requires a
robust and detailed fungal classification and phylogeny to facilitate efficient and informative …
robust and detailed fungal classification and phylogeny to facilitate efficient and informative …