Continuum electrostatics approaches to calculating pKas and Ems in proteins

MR Gunner, NA Baker - Methods in enzymology, 2016 - Elsevier
Proteins change their charge state through protonation and redox reactions as well as
through binding charged ligands. The free energy of these reactions is dominated by …

Protein–DNA and ion–DNA interactions revealed through contrast variation SAXS

JM Tokuda, SA Pabit, L Pollack - Biophysical reviews, 2016 - Springer
Understanding how DNA carries out its biological roles requires knowledge of its
interactions with biological partners. Since DNA is a polyanionic polymer, electrostatic …

The structure and intermolecular forces of DNA condensates

J Yoo, A Aksimentiev - Nucleic acids research, 2016 - academic.oup.com
Spontaneous assembly of DNA molecules into compact structures is ubiquitous in biological
systems. Experiment has shown that polycations can turn electrostatic self-repulsion of DNA …

Mechanism of chain collapse of strongly charged polyelectrolytes

AM Tom, S Vemparala, R Rajesh, NV Brilliantov - Physical review letters, 2016 - APS
We perform extensive molecular dynamics simulations of a charged polymer in a good
solvent in the regime where the chain is collapsed. We analyze the dependence of the …

Electrolyte-mediated assembly of charged nanoparticles

S Kewalramani, GI Guerrero-García… - ACS central …, 2016 - ACS Publications
Solutions at high salt concentrations are used to crystallize or segregate charged colloids,
including proteins and polyelectrolytes via a complex mechanism referred to as “salting-out” …

Aggregation dynamics of rigid polyelectrolytes

AM Tom, R Rajesh, S Vemparala - The Journal of Chemical Physics, 2016 - pubs.aip.org
Similarly charged polyelectrolytes are known to attract each other and aggregate into
bundles when the charge density of the polymers exceeds a critical value that depends on …

Single molecular demonstration of modulating charge inversion of DNA

Y Wang, R Wang, B Cao, Z Guo, G Yang - Scientific Reports, 2016 - nature.com
Charge inversion of DNA is a counterintuitive phenomenon in which the effective charge of
DNA switches its sign from negative to positive in the presence of multivalent counterions …

Potassium and the K+/H+ exchanger Kha1p promote binding of copper to ApoFet3p multi-copper ferroxidase

X Wu, H Kim, J Seravalli, JJ Barycki, PJ Hart… - Journal of Biological …, 2016 - ASBMB
Acquisition and distribution of metal ions support a number of biological processes. Here we
show that respiratory growth of and iron acquisition by the yeast Saccharomyces cerevisiae …

Charged nanoparticle attraction in multivalent salt solution: A classical-fluids density functional theory and molecular dynamics study

KM Salerno, AL Frischknecht… - The Journal of Physical …, 2016 - ACS Publications
Negatively charged nanoparticles (NPs) in 1: 1, 1: 2, and 1: 3 electrolyte solutions are
studied in a primitive ion model using molecular dynamics (MD) simulations and classical …

Potential of mean force between like-charged nanoparticles: Many-body effect

X Zhang, JS Zhang, YZ Shi, XL Zhu, ZJ Tan - Scientific reports, 2016 - nature.com
Ion-mediated interaction is important for the properties of polyelectrolytes such as colloids
and nucleic acids. The effective pair interactions between two polyelectrolytes have been …