[HTML][HTML] Homoeologs: what are they and how do we infer them?
The evolutionary history of nearly all flowering plants includes a polyploidization event.
Homologous genes resulting from allopolyploidy are commonly referred to as 'homoeologs' …
Homologous genes resulting from allopolyploidy are commonly referred to as 'homoeologs' …
[HTML][HTML] The rubber tree genome reveals new insights into rubber production and species adaptation
C Tang, M Yang, Y Fang, Y Luo, S Gao, X Xiao, Z An… - Nature plants, 2016 - nature.com
Abstract The Para rubber tree (Hevea brasiliensis) is an economically important tropical tree
species that produces natural rubber, an essential industrial raw material. Here we present a …
species that produces natural rubber, an essential industrial raw material. Here we present a …
Large-scale analyses of angiosperm nucleotide-binding site-leucine-rich repeat genes reveal three anciently diverged classes with distinct evolutionary patterns
Nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes make up the largest plant
disease resistance gene family (R genes), with hundreds of copies occurring in individual …
disease resistance gene family (R genes), with hundreds of copies occurring in individual …
ATTED-II in 2016: a plant coexpression database towards lineage-specific coexpression
Y Aoki, Y Okamura, S Tadaka, K Kinoshita… - Plant and Cell …, 2016 - academic.oup.com
Abstract ATTED-II (http://atted. jp) is a coexpression database for plant species with parallel
views of multiple coexpression data sets and network analysis tools. The user can efficiently …
views of multiple coexpression data sets and network analysis tools. The user can efficiently …
Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum
MA Hardigan, E Crisovan, JP Hamilton, J Kim… - The Plant …, 2016 - academic.oup.com
Clonally reproducing plants have the potential to bear a significantly greater mutational load
than sexually reproducing species. To investigate this possibility, we examined the breadth …
than sexually reproducing species. To investigate this possibility, we examined the breadth …
A phylogenomic assessment of ancient polyploidy and genome evolution across the Poales
Comparisons of flowering plant genomes reveal multiple rounds of ancient polyploidy
characterized by large intragenomic syntenic blocks. Three such whole-genome duplication …
characterized by large intragenomic syntenic blocks. Three such whole-genome duplication …
SimpleSynteny: a web-based tool for visualization of microsynteny across multiple species
Defining syntenic relationships among orthologous gene clusters is a frequent undertaking
of biologists studying organismal evolution through comparative genomic approaches. With …
of biologists studying organismal evolution through comparative genomic approaches. With …
Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa
Subgenome dominance is an important phenomenon observed in allopolyploids after whole
genome duplication, in which one subgenome retains more genes as well as contributes …
genome duplication, in which one subgenome retains more genes as well as contributes …
[HTML][HTML] Genome-wide identification, characterization and expression analysis of the chalcone synthase family in maize
Y Han, T Ding, B Su, H Jiang - International journal of molecular sciences, 2016 - mdpi.com
Members of the chalcone synthase (CHS) family participate in the synthesis of a series of
secondary metabolites in plants, fungi and bacteria. The metabolites play important roles in …
secondary metabolites in plants, fungi and bacteria. The metabolites play important roles in …
Genome-wide characterization and expression analysis of common bean bHLH transcription factors in response to excess salt concentration
M Kavas, MC Baloğlu, ES Atabay, UT Ziplar… - Molecular genetics and …, 2016 - Springer
Members of basic helix-loop-helix (bHLH) gene family found in all eukaryotes play crucial
roles in response to stress. Though, most eukaryotes carry the proteins of this family …
roles in response to stress. Though, most eukaryotes carry the proteins of this family …