Binding mode and induced fit predictions for prospective computational drug design

C Grebner, J Iegre, J Ulander, K Edman… - Journal of Chemical …, 2016 - ACS Publications
Computer-aided drug design plays an important role in medicinal chemistry to obtain
insights into molecular mechanisms and to prioritize design strategies. Although significant …

Evaluation of galaxydock based on the community structure–activity resource 2013 and 2014 benchmark studies

WH Shin, GR Lee, C Seok - Journal of Chemical Information and …, 2016 - ACS Publications
We analyze the results of the GalaxyDock protein–ligand docking program in the two recent
experiments of Community Structure–Activity Resource (CSAR), CSAR 2013 and 2014 …

Contact‐assisted protein structure modeling by global optimization in CASP11

K Joo, IS Joung, Q Cheng, SJ Lee… - … : Structure, Function, and …, 2016 - Wiley Online Library
We have applied the conformational space annealing method to the contact‐assisted
protein structure modeling in CASP11. For Tp targets, where predicted residue–residue …

Different types of molecular docking based on variations of interacting molecules: variations of molecular docking

A Das, S Bhattacharya - … and algorithms for molecular docking-based …, 2016 - igi-global.com
Molecular docking plays an important role in drug discovery research by facilitating target
identification, target validation, virtual screening for lead identification and lead optimization …

Link community detection through global optimization and the inverse resolution limit of partition density

J Lee, ZY Zhang, J Lee, BR Brooks, YY Ahn - arXiv preprint arXiv …, 2016 - arxiv.org
We investigate the possibility of global optimization-based overlapping community detection,
using link community framework. We first show that partition density, the original quality …

Prediction of protein interactions by bioinformatics and physical chemistry approaches

이하섭 - 2016 - s-space.snu.ac.kr
Proteins play key roles in many biological systems through protein interactions. Research of
protein interactions can help to understand protein functions and develop new drugs …