Recruitment market trend analysis with sequential latent variable models

C Zhu, H Zhu, H Xiong, P Ding, F Xie - Proceedings of the 22nd ACM …, 2016 - dl.acm.org
Recruitment market analysis provides valuable understanding of industry-specific economic
growth and plays an important role for both employers and job seekers. With the rapid …

Time-dependence of graph theory metrics in functional connectivity analysis

S Chiang, A Cassese, M Guindani, M Vannucci… - NeuroImage, 2016 - Elsevier
Brain graphs provide a useful way to computationally model the network structure of the
connectome, and this has led to increasing interest in the use of graph theory to quantitate …

Fast bayesian inference of copy number variants using hidden Markov models with wavelet compression

J Wiedenhoeft, E Brugel, A Schliep - PLOS Computational Biology, 2016 - journals.plos.org
By integrating Haar wavelets with Hidden Markov Models, we achieve drastically reduced
running times for Bayesian inference using Forward-Backward Gibbs sampling. We show …

Statistical models for DNA copy number variation detection using read‐depth data from next generation sequencing experiments

T Ji, J Chen - Australian & New Zealand Journal of Statistics, 2016 - Wiley Online Library
Summary In this 'Big Data'era, statisticians inevitably encounter data generated from various
disciplines. In particular, advances in bio‐technology have enabled scientists to produce …

Sequential model selection-based segmentation to detect DNA copy number variation

J Hu, L Zhang, HJ Wang - Biometrics, 2016 - academic.oup.com
Array-based CGH experiments are designed to detect genomic aberrations or regions of
DNA copy-number variation that are associated with an outcome, typically a state of disease …

A robust aCGH data recovery framework based on half quadratic minimization

M Mohammadi, GA Hodtani - Computers in biology and medicine, 2016 - Elsevier
This paper presents a general half quadratic framework for simultaneous analysis of the
whole array comparative genomic hybridization (aCGH) profiles in a data set. The proposed …

基于隐马尔可夫模型的array-CGH 数据贝叶斯分析

万稚慧, 刘金山 - 系统工程理论与实践, 2016 - cqvip.com
微阵列比较基因组杂化(comparative genomic hybridization, CGH) 技术是用于发现DNA
拷贝数变异的重要技术. 本文根据DNA 片段间的距离及测试样本与参考样本之间的荧光强度比 …

Detecting and analyzing copy number alternations in array-based cgh data

MA Sheha, MS Mabrouk, M Elhefnawi - … : Applications, Basis and …, 2016 - World Scientific
Copy number changes or alterations are a form of genetic variation in the human genome.
Genomic DNA copy number alterations (CNAs) are associated with the development and …

iBATCGH: Integrative Bayesian analysis of transcriptomic and CGH data

A Cassese, M Guindani, M Vannucci - Statistical Analysis for High …, 2016 - Springer
We describe a method for the integration of high-throughput data from different sources.
More specifically, iBATCGH is a package for the integrative analysis of transcriptomic and …

[HTML][HTML] A semiparametric Bayesian model for comparing DNA copy numbers

L Nieto-Barajas, Y Ji… - Brazilian journal of …, 2016 - ncbi.nlm.nih.gov
We propose a two-step method for the analysis of copy number data. We first define the
partitions of genome aberrations and conditional on the partitions we introduce a …