Comprehensive genome and epigenome characterization of CHO cells in response to evolutionary pressures and over time
J Feichtinger, I Hernández, C Fischer… - Biotechnology and …, 2016 - Wiley Online Library
The most striking characteristic of CHO cells is their adaptability, which enables efficient
production of proteins as well as growth under a variety of culture conditions, but also results …
production of proteins as well as growth under a variety of culture conditions, but also results …
DNA methylation changes induced by long and short photoperiods in Nasonia
M Pegoraro, A Bafna, NJ Davies, DM Shuker… - Genome …, 2016 - genome.cshlp.org
Many organisms monitor the annual change in day length and use this information for the
timing of their seasonal response. However, the molecular mechanisms underlying …
timing of their seasonal response. However, the molecular mechanisms underlying …
Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments
In MS‐based quantitative proteomics, the FDR control (ie the limitation of the number of
proteins that are wrongly claimed as differentially abundant between several conditions) is a …
proteins that are wrongly claimed as differentially abundant between several conditions) is a …
HMM-DM: identifying differentially methylated regions using a hidden Markov model
DNA methylation is an epigenetic modification involved in organism development and
cellular differentiation. Identifying differential methylations can help to study genomic regions …
cellular differentiation. Identifying differential methylations can help to study genomic regions …
The CD4+ T cell methylome contributes to a distinct CD4+ T cell transcriptional signature in Mycobacterium bovis-infected cattle
R Doherty, R Whiston, P Cormican, EK Finlay… - Scientific reports, 2016 - nature.com
We hypothesised that epigenetic regulation of CD4+ T lymphocytes contributes to a shift
toward a dysfunctional T cell phenotype which may impact on their ability to clear …
toward a dysfunctional T cell phenotype which may impact on their ability to clear …
Sex differences in DNA methylation and expression in zebrafish brain: a test of an extended 'male sex drive'hypothesis
The sex drive hypothesis predicts that stronger selection on male traits has resulted in
masculinization of the genome. Here we test whether such masculinizing effects can be …
masculinization of the genome. Here we test whether such masculinizing effects can be …
From the cover: sperm molecular biomarkers are sensitive indicators of testicular injury following subchronic model toxicant exposure
E Dere, SK Wilson, LM Anderson… - Toxicological …, 2016 - academic.oup.com
Traditional testis histopathology endpoints remain the gold standard for evaluating testicular
insult and injury in a non-clinical setting, but are invasive and unfeasible for monitoring …
insult and injury in a non-clinical setting, but are invasive and unfeasible for monitoring …
Comparing five statistical methods of differential methylation identification using bisulfite sequencing data
We are presenting a comprehensive comparative analysis of five differential methylation
(DM) identification methods: methylKit, BSmooth, BiSeq, HMM-DM, and HMM-Fisher, which …
(DM) identification methods: methylKit, BSmooth, BiSeq, HMM-DM, and HMM-Fisher, which …
[HTML][HTML] Distinct epigenetic signatures elucidate enhancer-gene relationships that delineate CIMP and non-CIMP colorectal cancers
A Chong, JX Teo, KHK Ban - Oncotarget, 2016 - ncbi.nlm.nih.gov
Epigenetic changes, like DNA methylation, affect gene expression and in colorectal cancer
(CRC), a distinct phenotype called the CpG island methylator phenotype (“CIMP”) has …
(CRC), a distinct phenotype called the CpG island methylator phenotype (“CIMP”) has …
[HTML][HTML] DNA methylation signature of post-injury neointimal cells during vascular remodeling in the rat balloon injury model
J Richards, HA Ogoe, W Li, O Babayewa… - … biology (Los Angeles …, 2016 - ncbi.nlm.nih.gov
Vascular smooth muscle cell (VSMC) accumulation in the neointimal is a common feature in
vascular diseases such as atherosclerosis, transplant arteriosclerosis and restenosis. In this …
vascular diseases such as atherosclerosis, transplant arteriosclerosis and restenosis. In this …