Using biological networks to integrate, visualize and analyze genomics data

T Charitou, K Bryan, DJ Lynn - Genetics Selection Evolution, 2016 - Springer
Network biology is a rapidly developing area of biomedical research and reflects the current
view that complex phenotypes, such as disease susceptibility, are not the result of single …

Lectin-glycan interaction network-based identification of host receptors of microbial pathogenic adhesins

FS Ielasi, M Alioscha-Perez, D Donohue, S Claes… - MBio, 2016 - Am Soc Microbiol
The first step in the infection of humans by microbial pathogens is their adherence to host
tissue cells, which is frequently based on the binding of carbohydrate-binding proteins …

Antiviral innate immunity through the lens of systems biology

S Tripathi, A Garcia-Sastre - Virus research, 2016 - Elsevier
Cellular innate immunity poses the first hurdle against invading viruses in their attempt to
establish infection. This antiviral response is manifested with the detection of viral …

Reconstructed cell fate–regulatory programs in stem cells reveal hierarchies and key factors of neurogenesis

MA Mendoza-Parra, V Malysheva… - Genome …, 2016 - genome.cshlp.org
Cell lineages, which shape the body architecture and specify cell functions, derive from the
integration of a plethora of cell intrinsic and extrinsic signals. These signals trigger a …

Reconstruction of gene regulatory networks reveals chromatin remodelers and key transcription factors in tumorigenesis

V Malysheva, MA Mendoza-Parra, MAM Saleem… - Genome medicine, 2016 - Springer
Background Alterations in genetic and epigenetic landscapes are known to contribute to the
development of different types of cancer. However, the mechanistic links between …

Bioinformatics: novel insights from genomic information

REW Hancock - Next-generation nutritional biomarkers to guide better …, 2016 - karger.com
While scientific methods have dominated research approaches in biology over the past
decades, it is increasingly recognized that the complexity of biological systems must be …

Developing a Visual Analytics Tool for Large-Scale Proteomics Time-Series Data

J Vuong, C Stolte, S Kaur… - 2016 Big Data Visual …, 2016 - ieeexplore.ieee.org
High-resolution mass spectrometry can now track all temporal changes in the
phosphoproteomes of cells. The resulting time-series datasets pose a challenge ripe for the …

[PDF][PDF] Exploration of Component Diagrams with Multifocal Highlighting.

L Cmolik, L Holy - VISIGRAPP (2: IVAPP), 2016 - pdfs.semanticscholar.org
In the paper we present multifocal highlighting in reverse engineered component diagrams
to support software engineers in answering questions on relations between a number of …

On Biological Network Visualization: Understanding Challenges, Measuring the Status Quo, and Estimating Saliency of Visual Attributes

N Gopal - 2016 - digital.lib.washington.edu
Biomedical research increasingly relies on the analysis and visualization of a wide range of
collected data. However, for certain research questions, such as those investigating the …