Microbiome at the frontier of personalized medicine

PC Kashyap, N Chia, H Nelson, E Segal… - Mayo Clinic …, 2017 - Elsevier
The genomic revolution promises to transform our approach to treat patients by
individualizing treatments, reducing adverse events, and decreasing health care costs. The …

The Nature and Evolution of Genomic Diversity in the Mycobacterium tuberculosis Complex

D Brites, S Gagneux - Strain variation in the Mycobacterium tuberculosis …, 2017 - Springer
Abstract The Mycobacterium tuberculosis Complex (MTBC) consists of a clonal group of
several mycobacterial lineages pathogenic to a range of different mammalian hosts. In this …

Evolutionary pathway analysis and unified classification of East Asian lineage of Mycobacterium tuberculosis

E Shitikov, S Kolchenko, I Mokrousov, J Bespyatykh… - Scientific reports, 2017 - nature.com
Due to its rapid spread and association with the numerous outbreaks, the global spread of
East Asian lineage of Mycobacterium tuberculosis strains presents a global concern …

[HTML][HTML] Mycobacterium tuberculosis resistance prediction and lineage classification from genome sequencing: comparison of automated analysis tools

V Schleusener, CU Köser, P Beckert, S Niemann… - Scientific reports, 2017 - nature.com
Whole-genome sequencing (WGS) has the potential to accelerate drug-susceptibility testing
(DST) to design appropriate regimens for drug-resistant tuberculosis (TB). Several recently …

The Evolution of Strain Typing in the Mycobacterium tuberculosis Complex

M Merker, TA Kohl, S Niemann, P Supply - Strain Variation in the …, 2017 - Springer
Tuberculosis (TB) is a contagious disease with a complex epidemiology. Therefore,
molecular typing (genotyping) of Mycobacterium tuberculosis complex (MTBC) strains is of …

Use of whole-genome sequencing to distinguish relapse from reinfection in a completed tuberculosis clinical trial

AA Witney, ALE Bateson, A Jindani, PPJ Phillips… - BMC medicine, 2017 - Springer
Background RIFAQUIN was a tuberculosis chemotherapy trial in southern Africa including
regimens with high-dose rifapentine with moxifloxacin. Here, the application of whole …

Diversity and evolution of drug resistance mechanisms in Mycobacterium tuberculosis

M Al-Saeedi, S Al-Hajoj - Infection and drug resistance, 2017 - Taylor & Francis
Despite the efficacy of antibiotics to protect humankind against many deadly pathogens,
such as Mycobacterium tuberculosis, nothing can prevent the emergence of drug-resistant …

An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes

C Henri, P Leekitcharoenphon, HA Carleton… - Frontiers in …, 2017 - frontiersin.org
Background/objectives: Whole genome sequencing (WGS) has proven to be a powerful
subtyping tool for foodborne pathogenic bacteria like L. monocytogenes. The interests of …

The Evolutionary History, Demography, and Spread of the Mycobacterium tuberculosis Complex

M Barbier, T Wirth - Tuberculosis and the Tubercle Bacillus, 2017 - Wiley Online Library
Tuberculosis has plagued mankind over the centuries and probably accompanied modern
Homo sapiens out of Africa. The epidemiological agent of phthisis, also known as …

A Nonsynonymous SNP Catalog of Mycobacterium tuberculosis Virulence Genes and Its Use for Detecting New Potentially Virulent Sublineages

NE Mikheecheva, MV Zaychikova… - Genome biology and …, 2017 - academic.oup.com
Mycobacterium tuberculosis is divided into several distinct lineages, and various genetic
markers such as IS-elements, VNTR, and SNPs are used for lineage identification. We …