Hypoxia Inducible Factor (HIF) transcription factor family expansion, diversification, divergence and selection in eukaryotes

AM Graham, JS Presnell - PloS one, 2017 - journals.plos.org
Hypoxia inducible factor (HIF) transcription factors are crucial for regulating a variety of
cellular activities in response to oxygen stress (hypoxia). In this study, we determine the …

Deciphering the emergence, genetic diversity and evolution of classical swine fever virus

L Rios, L Coronado, D Naranjo-Feliciano… - Scientific reports, 2017 - nature.com
Classical swine fever (CSF) is one of the most important infectious diseases causing
significant economic losses. Its causal agent, CSF virus (CSFV), is a member of the …

Phylogenomic analyses of Crassiclitellata support major Northern and Southern Hemisphere clades and a Pangaean origin for earthworms

FE Anderson, BW Williams, KM Horn, C Erséus… - BMC Evolutionary …, 2017 - Springer
Abstract Background Earthworms (Crassiclitellata) are a diverse group of annelids of
substantial ecological and economic importance. Earthworms are primarily terrestrial …

Genome-wide analysis suggests the relaxed purifying selection affect the evolution of WOX genes in Pyrus bretschneideri, Prunus persica, Prunus mume, and …

Y Cao, Y Han, D Meng, G Li, D Li, M Abdullah… - Frontiers in …, 2017 - frontiersin.org
WUSCHEL-related homeobox (WOX) family is one of the largest group of transcription
factors (TFs) specifically found in plant kingdom. WOX TFs play an important role in plant …

Phylogenetic and molecular evolutionary analysis of mitophagy receptors under hypoxic conditions

X Wu, FH Wu, Q Wu, S Zhang, S Chen… - Frontiers in …, 2017 - frontiersin.org
As animals evolved to use oxygen as the main strategy to produce ATP through the process
of mitochondrial oxidative phosphorylation, the ability to adapt to fluctuating oxygen …

Evolutionary expansion and structural functionalism of the ancient family of profilin proteins

DK Pandey, B Chaudhary - Gene, 2017 - Elsevier
Abstract Structure and functional similarities of a recent protein's orthologs with its ancient
counterpart are largely determined by the configuration of evolutionary preservation of …

Molecular evolutionary mechanisms driving functional diversification of α-glucosidase in Lepidoptera

X Li, L Shi, Y Zhou, H Xie, X Dai, R Li, Y Chen… - Scientific Reports, 2017 - nature.com
The digestive tract of lepidopteran insects is unique given its highly alkaline pH. The
adaptive plasticity of digestive enzymes in this environment is crucial to the highly-efficient …

Discovery and evolution of novel hemerythrin genes in annelid worms

EM Costa-Paiva, NV Whelan, DS Waits… - BMC evolutionary …, 2017 - Springer
Background Despite extensive study on hemoglobins and hemocyanins, little is known
about hemerythrin (Hr) evolutionary history. Four subgroups of Hrs have been documented …

Genome-Wide Comprehensive Analysis the Molecular Phylogenetic Evaluation and Tissue-Specific Expression of SABATH Gene Family in Salvia miltiorrhiza

B Wang, S Wang, Z Wang - Genes, 2017 - mdpi.com
The plant SABATH gene family is a group of O-methyltransferases (O-MTs), which belongs
to the S-adenosyl-l-methionine-dependent methyltransferases (SAM-MTs). The resulting …

Functional divergence and origin of the DAG-like gene family in plants

M Luo, M Cai, J Zhang, Y Li, R Zhang, W Song… - Scientific Reports, 2017 - nature.com
The nuclear-encoded DAG-like (DAL) gene family plays critical roles in organelle C-to-U
RNA editing in Arabidopsis thaliana. However, the origin, diversification and functional …