Regulation by 3′-untranslated regions

C Mayr - Annual review of genetics, 2017 - annualreviews.org
3′-untranslated regions (3′-UTRs) are the noncoding parts of mRNAs. Compared to
yeast, in humans, median 3′-UTR length has expanded approximately tenfold alongside …

[HTML][HTML] SR proteins: binders, regulators, and connectors of RNA

S Jeong - Molecules and cells, 2017 - Elsevier
Serine and arginine-rich (SR) proteins are RNA-binding proteins (RBPs) known as
constitutive and alternative splicing regulators. As splicing is linked to transcriptional and …

Variant interpretation: functional assays to the rescue

LM Starita, N Ahituv, MJ Dunham, JO Kitzman… - The American Journal of …, 2017 - cell.com
Classical genetic approaches for interpreting variants, such as case-control or co-
segregation studies, require finding many individuals with each variant. Because the …

A compendium of RNA-binding proteins that regulate microRNA biogenesis

T Treiber, N Treiber, U Plessmann, S Harlander… - Molecular cell, 2017 - cell.com
During microRNA (miRNA) biogenesis, two endonucleolytic reactions convert stem-loop-
structured precursors into mature miRNAs. These processing steps can be …

Swarm intelligence-enhanced detection of non-small-cell lung cancer using tumor-educated platelets

MG Best, N Sol, S GJG, A Vancura, M Muller… - Cancer cell, 2017 - cell.com
Blood-based liquid biopsies, including tumor-educated blood platelets (TEPs), have
emerged as promising biomarker sources for non-invasive detection of cancer. Here we …

LARP1 functions as a molecular switch for mTORC1-mediated translation of an essential class of mRNAs

S Hong, MA Freeberg, T Han, A Kamath, Y Yao… - Elife, 2017 - elifesciences.org
The RNA binding protein, LARP1, has been proposed to function downstream of mTORC1
to regulate the translation of 5'TOP mRNAs such as those encoding ribosome proteins (RP) …

Deep learning of the regulatory grammar of yeast 5′ untranslated regions from 500,000 random sequences

JT Cuperus, B Groves, A Kuchina… - Genome …, 2017 - genome.cshlp.org
Our ability to predict protein expression from DNA sequence alone remains poor, reflecting
our limited understanding of cis-regulatory grammar and hampering the design of …

The roles of RNA processing in translating genotype to phenotype

KS Manning, TA Cooper - Nature reviews Molecular cell biology, 2017 - nature.com
A goal of human genetics studies is to determine the mechanisms by which genetic variation
produces phenotypic differences that affect human health. Efforts in this respect have …

Intrinsically disordered RGG/RG domains mediate degenerate specificity in RNA binding

BA Ozdilek, VF Thompson, NS Ahmed… - Nucleic acids …, 2017 - academic.oup.com
RGG/RG domains are the second most common RNA binding domain in the human
genome, yet their RNA-binding properties remain poorly understood. Here, we report a …

Pathogenic variants that alter protein code often disrupt splicing

R Soemedi, KJ Cygan, CL Rhine, J Wang, C Bulacan… - Nature …, 2017 - nature.com
The lack of tools to identify causative variants from sequencing data greatly limits the
promise of precision medicine. Previous studies suggest that one-third of disease …