[HTML][HTML] Role of computational methods in going beyond X-ray crystallography to explore protein structure and dynamics
Protein structural biology came a long way since the determination of the first three-
dimensional structure of myoglobin about six decades ago. Across this period, X-ray …
dimensional structure of myoglobin about six decades ago. Across this period, X-ray …
Chemical shift-based methods in NMR structure determination
Chemical shifts are highly sensitive probes harnessed by NMR spectroscopists and
structural biologists as conformational parameters to characterize a range of biological …
structural biologists as conformational parameters to characterize a range of biological …
[HTML][HTML] A cryptic RNA-binding domain mediates Syncrip recognition and exosomal partitioning of miRNA targets
F Hobor, A Dallmann, NJ Ball, C Cicchini… - Nature …, 2018 - nature.com
Exosomal miRNA transfer is a mechanism for cell–cell communication that is important in
the immune response, in the functioning of the nervous system and in cancer …
the immune response, in the functioning of the nervous system and in cancer …
[HTML][HTML] Structure and pro-toxic mechanism of the human Hsp90/PPIase/Tau complex
The molecular chaperone Hsp90 is critical for the maintenance of cellular homeostasis and
represents a promising drug target. Despite increasing knowledge on the structure of Hsp90 …
represents a promising drug target. Despite increasing knowledge on the structure of Hsp90 …
[HTML][HTML] Molecular dynamics simulations revealed structural differences among WRKY domain-DNA interaction in barley (Hordeum vulgare)
B Pandey, A Grover, P Sharma - BMC genomics, 2018 - Springer
Background The WRKY transcription factors are a class of DNA-binding proteins involved in
diverse plant processes play critical roles in response to abiotic and biotic stresses. Genome …
diverse plant processes play critical roles in response to abiotic and biotic stresses. Genome …
Cloning, overexpression, purification of bacteriocin enterocin-B and structural analysis, interaction determination of enterocin-A, B against pathogenic bacteria and …
D Ankaiah, E Palanichamy, CB Antonyraj… - International journal of …, 2018 - Elsevier
In this present study, a gene (ent-B) encoding the bacteriocin enterocin-B was cloned,
overexpressed and purified from Enterococcus faecium por1. The molecular weight of the …
overexpressed and purified from Enterococcus faecium por1. The molecular weight of the …
Determining Cholesterol Binding to Membrane Proteins by Cholesterol 13C Labeling in Yeast and Dynamic Nuclear Polarization NMR
We present a general strategy for determining the cholesterol-binding site of eukaryotic
membrane proteins in native-like lipid membranes by NMR spectroscopy. The strategy …
membrane proteins in native-like lipid membranes by NMR spectroscopy. The strategy …
Structure-based prediction of protein–peptide binding regions using Random Forest
Motivation Protein–peptide interactions are one of the most important biological interactions
and play crucial role in many diseases including cancer. Therefore, knowledge of these …
and play crucial role in many diseases including cancer. Therefore, knowledge of these …
[HTML][HTML] RSV hijacks cellular protein phosphatase 1 to regulate M2-1 phosphorylation and viral transcription
CA Richard, V Rincheval, S Lassoued, J Fix… - PLoS …, 2018 - journals.plos.org
Respiratory syncytial virus (RSV) RNA synthesis occurs in cytoplasmic inclusion bodies (IBs)
in which all the components of the viral RNA polymerase are concentrated. In this work, we …
in which all the components of the viral RNA polymerase are concentrated. In this work, we …
InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs
Computational protein docking is a powerful strategy to predict structures of protein-protein
interactions and provides crucial insights for the functional characterization of …
interactions and provides crucial insights for the functional characterization of …