Electrostatic interactions in protein structure, folding, binding, and condensation

HX Zhou, X Pang - Chemical reviews, 2018 - ACS Publications
Charged and polar groups, through forming ion pairs, hydrogen bonds, and other less
specific electrostatic interactions, impart important properties to proteins. Modulation of the …

Competitive binding of Mg2+ and Na+ ions to nucleic acids: from helices to tertiary structures

K Xi, FH Wang, G Xiong, ZL Zhang, ZJ Tan - Biophysical journal, 2018 - cell.com
Nucleic acids generally reside in cellular aqueous solutions with mixed divalent/monovalent
ions, and the competitive binding of divalent and monovalent ions is critical to the structures …

Extensional relaxation time, pinch-off dynamics, and printability of semidilute polyelectrolyte solutions

LN Jimenez, J Dinic, N Parsi, V Sharma - Macromolecules, 2018 - ACS Publications
Quantitative studies of capillary-driven thinning and pinch-off dynamics of semidilute
polyelectrolyte solutions, and their response to extensional flows, typically encountered in …

Protein complexes and virus-like particle technology

A Zeltins - Virus protein and nucleoprotein complexes, 2018 - Springer
Virus-like particle (VLP) technologies are based on virus-inspired artificial structures and the
intrinsic ability of viral proteins to self-assemble at controlled conditions. Therefore, the basic …

Cations modulate actin bundle mechanics, assembly dynamics, and structure

N Castaneda, T Zheng… - The Journal of …, 2018 - ACS Publications
Actin bundles are key factors in the mechanical support and dynamic reorganization of the
cytoskeleton. High concentrations of multivalent counterions promote bundle formation …

Open-boundary molecular dynamics of a DNA molecule in a hybrid explicit/implicit salt solution

J Zavadlav, J Sablić, R Podgornik, M Praprotnik - Biophysical journal, 2018 - cell.com
The composition and electrolyte concentration of the aqueous bathing environment have
important consequences for many biological processes and can profoundly affect the …

Viscoelastic subdiffusion in a random Gaussian environment

I Goychuk - Physical Chemistry Chemical Physics, 2018 - pubs.rsc.org
Viscoelastic subdiffusion governed by a fractional Langevin equation is studied numerically
in a random Gaussian environment modeled by stationary Gaussian potentials with …

Conformational response to charge clustering in synthetic intrinsically disordered proteins

G Tedeschi, E Salladini, C Santambrogio… - … et Biophysica Acta (BBA …, 2018 - Elsevier
Background Recent theoretical and computational studies have shown that the charge
content and, most importantly, the linear distribution of opposite charges are major …

Phase separations, liquid crystal ordering and molecular partitioning in mixtures of PEG and DNA oligomers

S Di Leo, M Todisco, T Bellini, TP Fraccia - Liquid Crystals, 2018 - Taylor & Francis
Liquid crystals (LCs) ordering of DNA and RNA oligomers relies on the presence of inter-
duplex end-to-end attraction, driving the formation of linear aggregates. Such interactions …

Charge evolution during the unfolding of a single DNA i-motif

W Ren, K Zheng, C Liao, J Yang, J Zhao - … Chemistry Chemical Physics, 2018 - pubs.rsc.org
The effective charge and evolution of single chains of a DNA i-motif during its unfolding
process are investigated at the single molecule level. Using fluorescence correlation …