ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
Background Evolutionary histories can be discordant across the genome, and such
discordances need to be considered in reconstructing the species phylogeny. ASTRAL is …
discordances need to be considered in reconstructing the species phylogeny. ASTRAL is …
Species tree inference with BPP using genomic sequences and the multispecies coalescent
The multispecies coalescent provides a natural framework for accommodating ancestral
genetic polymorphism and coalescent processes that can cause different genomic regions …
genetic polymorphism and coalescent processes that can cause different genomic regions …
Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow
The hundreds of cichlid fish species in Lake Malawi constitute the most extensive recent
vertebrate adaptive radiation. Here we characterize its genomic diversity by sequencing 134 …
vertebrate adaptive radiation. Here we characterize its genomic diversity by sequencing 134 …
Quartet sampling distinguishes lack of support from conflicting support in the green plant tree of life
Premise of the Study Phylogenetic support has been difficult to evaluate within the green
plant tree of life partly due to a lack of specificity between conflicted versus poorly informed …
plant tree of life partly due to a lack of specificity between conflicted versus poorly informed …
Gene Flow between Divergent Cereal- and Grass-Specific Lineages of the Rice Blast Fungus Magnaporthe oryzae
P Gladieux, B Condon, S Ravel, D Soanes, JLN Maciel… - MBio, 2018 - Am Soc Microbiol
Delineating species and epidemic lineages in fungal plant pathogens is critical to our
understanding of disease emergence and the structure of fungal biodiversity and also …
understanding of disease emergence and the structure of fungal biodiversity and also …
Bayesian divergence-time estimation with genome-wide single-nucleotide polymorphism data of sea catfishes (Ariidae) supports Miocene closure of the Panamanian …
M Stange, MR Sánchez-Villagra… - Systematic …, 2018 - academic.oup.com
The closure of the Isthmus of Panama has long been considered to be one of the best
defined biogeographic calibration points for molecular divergence-time estimation …
defined biogeographic calibration points for molecular divergence-time estimation …
Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae)
Hybridization, incomplete lineage sorting, and phylogenetic error produce similar
incongruence patterns, representing a great challenge for phylogenetic reconstruction …
incongruence patterns, representing a great challenge for phylogenetic reconstruction …
The complete mitochondrial genome of the early flowering plant Nymphaea colorata is highly repetitive with low recombination
Background Mitochondrial genomes of flowering plants (angiosperms) are highly dynamic in
genome structure. The mitogenome of the earliest angiosperm Amborella is remarkable in …
genome structure. The mitogenome of the earliest angiosperm Amborella is remarkable in …
Phylogenomic Analysis of the Explosive Adaptive Radiation of the Espeletia Complex (Asteraceae) in the Tropical Andes
Abstract The subtribe Espeletiinae (Asteraceae), endemic to the high-elevations in the
Northern Andes, exhibits an exceptional diversity of species, growth-forms, and reproductive …
Northern Andes, exhibits an exceptional diversity of species, growth-forms, and reproductive …
Why concatenation fails near the anomaly zone
Genome-scale sequencing has been of great benefit in recovering species trees but has not
provided final answers. Despite the rapid accumulation of molecular sequences, resolving …
provided final answers. Despite the rapid accumulation of molecular sequences, resolving …