Practical considerations for plant phylogenomics

MR McKain, MG Johnson… - Applications in plant …, 2018 - Wiley Online Library
The past decade has seen a major breakthrough in our ability to easily and inexpensively
sequence genome‐scale data from diverse lineages. The development of high‐throughput …

RADseq approaches and applications for forest tree genetics

TL Parchman, JP Jahner, KA Uckele… - Tree Genetics & …, 2018 - Springer
As tree species vary extensively in genome size, complexity, and resource development,
reduced representation methods have been increasingly employed for the generation of …

Sympatric parallel diversification of major oak clades in the Americas and the origins of Mexican species diversity

AL Hipp, PS Manos, A González‐Rodríguez… - New …, 2018 - Wiley Online Library
Summary Oaks (Quercus, Fagaceae) are the dominant tree genus of North America in
species number and biomass, and Mexico is a global center of oak diversity. Understanding …

Phylogeny and biogeography of East Asian evergreen oaks (Quercus section Cyclobalanopsis; Fagaceae): insights into the Cenozoic history of evergreen broad …

M Deng, XL Jiang, AL Hipp, PS Manos… - Molecular Phylogenetics …, 2018 - Elsevier
The evolutionary history of Quercus section Cyclobalanopsis, a dominant lineage in East
Asian evergreen broadleaved forests (EBLFs), has not been comprehensively studied using …

Resolving recent plant radiations: power and robustness of genotyping-by-sequencing

M Fernández-Mazuecos, G Mellers… - Systematic …, 2018 - academic.oup.com
Disentangling species boundaries and phylogenetic relationships within recent evolutionary
radiations is a challenge due to the poor morphological differentiation and low genetic …

Resolving rapid radiations within angiosperm families using anchored phylogenomics

É Léveillé-Bourret, JR Starr, BA Ford… - Systematic …, 2018 - academic.oup.com
Despite the promise that molecular data would provide a seemingly unlimited source of
independent characters, many plant phylogenetic studies are still based on only two …

[HTML][HTML] Worldwide phylogeny of three-spined sticklebacks

B Fang, J Merilä, F Ribeiro, CM Alexandre… - Molecular Phylogenetics …, 2018 - Elsevier
Stickleback fishes in the family Gasterosteidae have become model organisms in ecology
and evolutionary biology. However, even in the case of the most widely studied species in …

[HTML][HTML] Population genomic analyses of RAD sequences resolves the phylogenetic relationship of the lichen-forming fungal species Usneaantarctica and …

F Grewe, E Lagostina, H Wu, C Printzen, HT Lumbsch - MycoKeys, 2018 - ncbi.nlm.nih.gov
Neuropogonoid species in the lichen-forming fungal genus Usnea exhibit great
morphological variation that can be misleading for delimitation of species. We specifically …

[HTML][HTML] Comparative systematics and phylogeography of Quercus Section Cerris in western Eurasia: inferences from plastid and nuclear DNA variation

MC Simeone, S Cardoni, R Piredda, F Imperatori… - PeerJ, 2018 - peerj.com
Oaks (Quercus) comprise more than 400 species worldwide and centres of diversity for most
sections lie in the Americas and East/Southeast Asia. The only exception is the Eurasian …

RAD sequencing resolved phylogenetic relationships in European shrub willows (Salix L. subg. Chamaetia and subg. Vetrix) and revealed multiple evolution of …

ND Wagner, S Gramlich, E Hörandl - Ecology and Evolution, 2018 - Wiley Online Library
The large and diverse genus Salix L. is of particular interest for decades of biological
research. However, despite the morphological plasticity, the reconstruction of phylogenetic …