Taxonomy and evolution of Aspergillus, Penicillium and Talaromyces in the omics era–Past, present and future

CC Tsang, JYM Tang, SKP Lau, PCY Woo - Computational and structural …, 2018 - Elsevier
Abstract Aspergillus, Penicillium and Talaromyces are diverse, phenotypically polythetic
genera encompassing species important to the environment, economy, biotechnology and …

The mycobiome: a neglected component in the microbiota-gut-brain axis

R Enaud, LE Vandenborght, N Coron, T Bazin… - Microorganisms, 2018 - mdpi.com
In recent years, the gut microbiota has been considered as a full-fledged actor of the gut–
brain axis, making it possible to take a new step in understanding the pathophysiology of …

Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data

JM Palmer, MA Jusino, MT Banik, DL Lindner - PeerJ, 2018 - peerj.com
High-throughput amplicon sequencing (HTAS) of conserved DNA regions is a powerful
technique to characterize microbial communities. Recently, spike-in mock communities have …

Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples

G Lear, I Dickie, J Banks, S Boyer, HL Buckley… - New Zealand Journal of …, 2018 - JSTOR
Advances in the sequencing of DNA extracted from media such as soil and water offer huge
opportunities for biodiversity monitoring and assessment, particularly where the collection or …

New Ceratocystis species associated with rapid death of Metrosideros polymorpha in Hawaii

I Barnes, A Fourie, MJ Wingfield… - … and Evolution of …, 2018 - ingentaconnect.com
The nativeōhia lehua (Metrosideros polymorpha) has cultural, biological and ecological
significance to Hawaii, but it is seriously threatened by a disease commonly referred to as …

A multiscale study of fungal endophyte communities of the foliar endosphere of native rubber trees in Eastern Amazon

ABM Vaz, PLC Fonseca, F Badotti, D Skaltsas… - Scientific reports, 2018 - nature.com
Hevea brasiliensis is a native hyperdiverse tree species in the Amazon basin with great
economic importance since it produces the highest quality natural rubber. H. brasiliensis, in …

The role of biofilm forming on mortality in patients with candidemia: a study derived from real world data

C Tascini, E Sozio, L Corte, F Sbrana… - Infectious …, 2018 - Taylor & Francis
Background: Evaluation of the role on patient mortality exerted by biofilm forming (BF)
Candida strains, by using predictive clinical data. Methods: Eighty-nine strains isolated from …

Combined bacterial and fungal intestinal microbiota analyses: Impact of storage conditions and DNA extraction protocols

C Angebault, A Ghozlane, S Volant, F Botterel… - PloS one, 2018 - journals.plos.org
Background The human intestinal microbiota contains a vast community of microorganisms
increasingly studied using high-throughput DNA sequencing. Standardized protocols for …

Selection and experimental evaluation of universal primers to study the fungal microbiome of higher plants

S Scibetta, L Schena, A Abdelfattah… - Phytobiomes …, 2018 - Am Phytopath Society
The impact of primer choice on results of metabarcoding studies was experimentally
evaluated by analyzing fungal communities associated with leaves of four plant species …

Urinary microbiome associated with chronic allograft dysfunction in kidney transplant recipients

JF Wu, A Muthusamy, GA Al‐Ghalith… - Clinical …, 2018 - Wiley Online Library
Background We performed a study to identify differences in the urinary microbiome
associated with chronic allograft dysfunction (CAD) and compared the urinary microbiome of …