Controlling the immune suppressor: transcription factors and microRNAs regulating CD73/NT5E

T Kordaß, W Osen, SB Eichmüller - Frontiers in immunology, 2018 - frontiersin.org
The NT5E (CD73) molecule represents an ecto-5′-nucleotidase expressed on the cell
surface of various cell types. Hydrolyzing extracellular adenosine monophosphate into …

Predicting RNA–protein binding sites and motifs through combining local and global deep convolutional neural networks

X Pan, HB Shen - Bioinformatics, 2018 - academic.oup.com
Motivation RNA-binding proteins (RBPs) take over 5–10% of the eukaryotic proteome and
play key roles in many biological processes, eg gene regulation. Experimental detection of …

DDX3 activates CBC-eIF3–mediated translation of uORF-containing oncogenic mRNAs to promote metastasis in HNSCC

HH Chen, HI Yu, MH Yang, WY Tarn - Cancer research, 2018 - AACR
Mutated or dysregulated DDX3 participates in the progression and metastasis of cancer via
its multiple roles in regulating gene expression and cellular signaling. Here, we show that …

The LIN28B–IMP1 post-transcriptional regulon has opposing effects on oncogenic signaling in the intestine

P Chatterji, KE Hamilton, S Liang… - Genes & …, 2018 - genesdev.cshlp.org
RNA-binding proteins (RBPs) are expressed broadly during both development and
malignant transformation, yet their mechanistic roles in epithelial homeostasis or as drivers …

IGF2 mRNA binding protein 3 (IMP3) mediated regulation of transcriptome and translatome in glioma cells

S Bhargava, V Patil, RA Shah… - Cancer Biology & …, 2018 - Taylor & Francis
ABSTRACT RNA binding proteins mediate global regulation at the level of transcriptome
and translatome of a cell. We studied the global level expression changes regulated by …

Prediction of RNA-protein interactions using conjoint triad feature and chaos game representation

H Wang, P Wu - Bioengineered, 2018 - Taylor & Francis
ABSTRACT RNA-protein interactions (RPIs) play a very important role in a wide range of
post-transcriptional regulations, and identifying whether a given RNA-protein pair can form …

Inferring RNA sequence preferences for poorly studied RNA-binding proteins based on co-evolution

S Yang, J Wang, RT Ng - BMC bioinformatics, 2018 - Springer
Background Characterizing the binding preference of RNA-binding proteins (RBP) is
essential for us to understand the interaction between an RBP and its RNA targets, and to …

Integration of ENCODE RNAseq and eCLIP data sets

J Boucas - mRNA Decay: Methods and Protocols, 2018 - Springer
During the last decade, the study of mRNA decay has largely benefited from an increasing
number of high-throughput assays that emerged from developments in next generation …

DNA sequencing and copy number variation analysis of MCHR2 in a cohort of Prader Willi like (PWL) patients

E Geets, E Aerts, A Verrijken… - Obesity Research & …, 2018 - Elsevier
Summary Background Prader Willi Syndrome (PWS) is a syndromic form of obesity caused
by a chromosomal aberration on chromosome 15q11. 2–q13. Patients with a comparable …

An homeotic post-transcriptional network controlled by the RNA-binding protein RBMX

P Zuccotti, D Peroni, V Potrich, A Quattrone, E Dassi - bioRxiv, 2018 - biorxiv.org
Post-transcriptional regulation (PTR) of gene expression is a powerful determinant of protein
levels and cellular phenotypes. The 5'and 3'untranslated regions of the mRNA (UTRs) …