Understanding the promises and hurdles of metagenomic next-generation sequencing as a diagnostic tool for infectious diseases

PJ Simner, S Miller, KC Carroll - Clinical Infectious Diseases, 2018 - academic.oup.com
Agnostic metagenomic next-generation sequencing (mNGS) has emerged as a promising
single, universal pathogen detection method for infectious disease diagnostics. This …

Detection of emerging zoonotic pathogens: an integrated one health approach

BH Bird, JAK Mazet - Annual Review of Animal Biosciences, 2018 - annualreviews.org
The emergence of novel zoonotic pathogens is one of the greatest challenges to global
health security. The advent of increasingly sophisticated diagnostics tools has revolutionized …

The global virome project

D Carroll, P Daszak, ND Wolfe, GF Gao, CM Morel… - Science, 2018 - science.org
Outbreaks of novel and deadly viruses highlight global vulnerability to emerging diseases,
with many having massive health and economic impacts. Our adaptive toolkit—based …

Predicting reservoir hosts and arthropod vectors from evolutionary signatures in RNA virus genomes

SA Babayan, RJ Orton, DG Streicker - Science, 2018 - science.org
Identifying the animal origins of RNA viruses requires years of field and laboratory studies
that stall responses to emerging infectious diseases. Using large genomic and ecological …

Direct detection and identification of prosthetic joint infection pathogens in synovial fluid by metagenomic shotgun sequencing

MI Ivy, MJ Thoendel, PR Jeraldo… - Journal of clinical …, 2018 - Am Soc Microbiol
Metagenomic shotgun sequencing has the potential to transform how serious infections are
diagnosed by offering universal, culture-free pathogen detection. This may be especially …

[HTML][HTML] Assessment of metagenomic Nanopore and Illumina sequencing for recovering whole genome sequences of chikungunya and dengue viruses directly from …

LE Kafetzopoulou, K Efthymiadis… - …, 2018 - eurosurveillance.org
Background The recent global emergence and re-emergence of arboviruses has caused
significant human disease. Common vectors, symptoms and geographical distribution make …

Evaluation of bias induced by viral enrichment and random amplification protocols in metagenomic surveys of saliva DNA viruses

M Parras-Moltó, A Rodríguez-Galet… - Microbiome, 2018 - Springer
Background Viruses are key players regulating microbial ecosystems. Exploration of viral
assemblages is now possible thanks to the development of metagenomics, the most …

A metagenomic viral discovery approach identifies potential zoonotic and novel mammalian viruses in Neoromicia bats within South Africa

M Geldenhuys, M Mortlock, J Weyer, O Bezuidt… - PloS one, 2018 - journals.plos.org
Species within the Neoromicia bat genus are abundant and widely distributed in Africa. It is
common for these insectivorous bats to roost in anthropogenic structures in urban regions …

Detection of viruses in clinical samples by use of metagenomic sequencing and targeted sequence capture

KM Wylie, TN Wylie, R Buller, B Herter… - Journal of clinical …, 2018 - Am Soc Microbiol
Metagenomic shotgun sequencing (MSS) is a revolutionary approach to viral diagnostic
testing that allows simultaneous detection of a broad range of viruses, detailed taxonomic …

Vaccine-elicited receptor-binding site antibodies neutralize two New World hemorrhagic fever arenaviruses

LE Clark, S Mahmutovic, DD Raymond… - Nature …, 2018 - nature.com
While five arenaviruses cause human hemorrhagic fevers in the Western Hemisphere, only
Junin virus (JUNV) has a vaccine. The GP1 subunit of their envelope glycoprotein binds …