Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present, and future
The rumen is a complex ecosystem composed of anaerobic bacteria, protozoa, fungi,
methanogenic archaea and phages. These microbes interact closely to breakdown plant …
methanogenic archaea and phages. These microbes interact closely to breakdown plant …
The present and future of whole genome sequencing (WGS) and whole metagenome sequencing (WMS) for surveillance of antimicrobial resistant microorganisms …
EA Oniciuc, E Likotrafiti, A Alvarez-Molina, M Prieto… - Genes, 2018 - mdpi.com
Antimicrobial resistance (AMR) surveillance is a critical step within risk assessment
schemes, as it is the basis for informing global strategies, monitoring the effectiveness of …
schemes, as it is the basis for informing global strategies, monitoring the effectiveness of …
Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes
J Alneberg, CMG Karlsson, AM Divne, C Bergin… - Microbiome, 2018 - Springer
Background Prokaryotes dominate the biosphere and regulate biogeochemical processes
essential to all life. Yet, our knowledge about their biology is for the most part limited to the …
essential to all life. Yet, our knowledge about their biology is for the most part limited to the …
Interspecies cross-feeding orchestrates carbon degradation in the rumen ecosystem
Because of their agricultural value, there is a great body of research dedicated to
understanding the microorganisms responsible for rumen carbon degradation. However, we …
understanding the microorganisms responsible for rumen carbon degradation. However, we …
Comparison of Mothur and QIIME for the analysis of rumen microbiota composition based on 16S rRNA amplicon sequences
A López-García, C Pineda-Quiroga… - Frontiers in …, 2018 - frontiersin.org
Background: Microbiome studies need to analyze massive sequencing data, which requires
the use of sophisticated bioinformatics pipelines. Up to date, several tools are available …
the use of sophisticated bioinformatics pipelines. Up to date, several tools are available …
Analysis of sequencing strategies and tools for taxonomic annotation: defining standards for progressive metagenomics
Metagenomics research has recently thrived due to DNA sequencing technologies
improvement, driving the emergence of new analysis tools and the growth of taxonomic …
improvement, driving the emergence of new analysis tools and the growth of taxonomic …
A metagenomic analysis of the camel rumen's microbiome identifies the major microbes responsible for lignocellulose degradation and fermentation
J Gharechahi, GH Salekdeh - Biotechnology for Biofuels, 2018 - Springer
Background The diverse microbiome present in the rumen of ruminant animals facilitates the
digestion of plant-based fiber. In this study, a shotgun metagenomic analysis of the microbes …
digestion of plant-based fiber. In this study, a shotgun metagenomic analysis of the microbes …
Characterisation of the British honey bee metagenome
Abstract The European honey bee (Apis mellifera) plays a major role in pollination and food
production. Honey bee health is a complex product of the environment, host genetics and …
production. Honey bee health is a complex product of the environment, host genetics and …
Understanding the microbial basis of body odor in pre-pubescent children and teenagers
TH Lam, D Verzotto, P Brahma, AHQ Ng, P Hu… - Microbiome, 2018 - Springer
Background Even though human sweat is odorless, bacterial growth and decomposition of
specific odor precursors in it is believed to give rise to body odor in humans. While …
specific odor precursors in it is believed to give rise to body odor in humans. While …
The planktonic core microbiome and core functions in the cattle rumen by next generation sequencing
The cow rumen harbors a great variety of diverse microbes, which form a complex,
organized community. Understanding the behavior of this multifarious network is crucial in …
organized community. Understanding the behavior of this multifarious network is crucial in …