RNA‐protein interactions in an unstructured context
B Zagrovic, L Bartonek, AA Polyansky - FEBS letters, 2018 - Wiley Online Library
Despite their importance, our understanding of noncovalent RNA–protein interactions is
incomplete. This especially concerns the binding between RNA and unstructured protein …
incomplete. This especially concerns the binding between RNA and unstructured protein …
[HTML][HTML] Bioinformatics tools and benchmarks for computational docking and 3D structure prediction of RNA-protein complexes
RNA-protein (RNP) interactions play essential roles in many biological processes, such as
regulation of co-transcriptional and post-transcriptional gene expression, RNA splicing …
regulation of co-transcriptional and post-transcriptional gene expression, RNA splicing …
Assessing the performance of MM/PBSA and MM/GBSA methods. 8. Predicting binding free energies and poses of protein–RNA complexes
Molecular docking provides a computationally efficient way to predict the atomic structural
details of protein–RNA interactions (PRI), but accurate prediction of the three-dimensional …
details of protein–RNA interactions (PRI), but accurate prediction of the three-dimensional …
Protein–RNA interactions: structural characteristics and hotspot amino acids
DM Krüger, S Neubacher, TN Grossmann - Rna, 2018 - rnajournal.cshlp.org
Structural information about protein–RNA complexes supports the understanding of crucial
recognition processes in the cell, and it can allow the development of high affinity ligands to …
recognition processes in the cell, and it can allow the development of high affinity ligands to …
Weak IgG self‐and hetero‐association characterized by fluorescence analytical ultracentrifugation
D Yang, JJ Correia, WF Stafford III, CJ Roberts… - Protein …, 2018 - Wiley Online Library
Weak protein–protein interactions may be important to binding cooperativity. A panel of
seven fluorescently labeled tracer monoclonal IgG antibodies, differing in variable (V) and …
seven fluorescently labeled tracer monoclonal IgG antibodies, differing in variable (V) and …
[HTML][HTML] Molecular modeling applied to nucleic acid-based molecule development
A Krüger, FM Zimbres, T Kronenberger, C Wrenger - Biomolecules, 2018 - mdpi.com
Molecular modeling by means of docking and molecular dynamics (MD) has become an
integral part of early drug discovery projects, enabling the screening and enrichment of large …
integral part of early drug discovery projects, enabling the screening and enrichment of large …
3dRPC: a web server for 3D RNA–protein structure prediction
Y Huang, H Li, Y Xiao - Bioinformatics, 2018 - academic.oup.com
RNA–protein interactions occur in many biological processes. To understand the
mechanism of these interactions one needs to know three-dimensional (3D) structures of …
mechanism of these interactions one needs to know three-dimensional (3D) structures of …
[HTML][HTML] Deciphering RNA-recognition patterns of intrinsically disordered proteins
Intrinsically disordered regions (IDRs) and protein (IDPs) are highly flexible owing to their
lack of well-defined structures. A subset of such proteins interacts with various substrates; …
lack of well-defined structures. A subset of such proteins interacts with various substrates; …
Protein-RNA docking using ICM
YA Arnautova, R Abagyan, M Totrov - Journal of Chemical Theory …, 2018 - ACS Publications
Protein-RNA interactions play an important role in many biological processes.
Computational methods such as docking have been developed to complement existing …
Computational methods such as docking have been developed to complement existing …
Inhibition of protein interactions: co-crystalized protein–protein interfaces are nearly as good as holo proteins in rigid-body ligand docking
Modulating protein interaction pathways may lead to the cure of many diseases. Known
protein–protein inhibitors bind to large pockets on the protein–protein interface. Such large …
protein–protein inhibitors bind to large pockets on the protein–protein interface. Such large …