What method to use for protein–protein docking?
Highlights•The best servers based on “free” docking methods find acceptable models
among the top 10 predictions for around 40% of the targets.•Re-ranking the predictions by a …
among the top 10 predictions for around 40% of the targets.•Re-ranking the predictions by a …
Solution NMR: A powerful tool for structural and functional studies of membrane proteins in reconstituted environments
R Puthenveetil, O Vinogradova - Journal of Biological Chemistry, 2019 - ASBMB
A third of the genes in prokaryotic and eukaryotic genomes encode membrane proteins that
are either essential for signal transduction and solute transport or function as scaffold …
are either essential for signal transduction and solute transport or function as scaffold …
HawkDock: a web server to predict and analyze the protein–protein complex based on computational docking and MM/GBSA
Protein–protein interactions (PPIs) play an important role in the different functions of cells,
but accurate prediction of the three-dimensional structures for PPIs is still a notoriously …
but accurate prediction of the three-dimensional structures for PPIs is still a notoriously …
Bispecific aptamer induced artificial protein-pairing: a strategy for selective inhibition of receptor function
L Wang, H Liang, J Sun, Y Liu, J Li, J Li… - Journal of the …, 2019 - ACS Publications
Cell surface receptors play a critical role in modulating intracellular signal transduction,
making them important drug targets. However, it remains challenging to develop a selective …
making them important drug targets. However, it remains challenging to develop a selective …
Mechanism of glucocerebrosidase activation and dysfunction in Gaucher disease unraveled by molecular dynamics and deep learning
R Romero, A Ramanathan, T Yuen… - Proceedings of the …, 2019 - National Acad Sciences
The lysosomal enzyme glucocerebrosidase-1 (GCase) catalyzes the cleavage of a major
glycolipid glucosylceramide into glucose and ceramide. The absence of fully functional …
glycolipid glucosylceramide into glucose and ceramide. The absence of fully functional …
c-Met activation leads to the establishment of a TGFβ-receptor regulatory network in bladder cancer progression
WJ Sim, PV Iyengar, D Lama, SKL Lui, HC Ng… - Nature …, 2019 - nature.com
Abstract Treatment of muscle-invasive bladder cancer remains a major clinical challenge.
Aberrant HGF/c-MET upregulation and activation is frequently observed in bladder cancer …
Aberrant HGF/c-MET upregulation and activation is frequently observed in bladder cancer …
[PDF][PDF] COA6 is structurally tuned to function as a thiol-disulfide oxidoreductase in copper delivery to mitochondrial cytochrome c oxidase
In eukaryotes, cellular respiration is driven by mitochondrial cytochrome c oxidase (CcO), an
enzyme complex that requires copper cofactors for its catalytic activity. Insertion of copper …
enzyme complex that requires copper cofactors for its catalytic activity. Insertion of copper …
Molecular docking and dynamic approach to virtual screen inhibitors against Esbp of Candidatus Liberibacter asiaticus
Citrus greening (huanglongbing) is the most destructive disease of citrus worldwide caused
by Candidatus Liberibacter asiaticus (CLA). Currently, no strategies have been developed to …
by Candidatus Liberibacter asiaticus (CLA). Currently, no strategies have been developed to …
HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures
Interactions between nuclide acids (RNA/DNA) play important roles in many basic cellular
activities like transcription regulation, RNA processing, and protein synthesis. Therefore …
activities like transcription regulation, RNA processing, and protein synthesis. Therefore …
Phosphorylation of 14-3-3ζ links YAP transcriptional activation to hypoxic glycolysis for tumorigenesis
Y Jia, HY Li, J Wang, Y Wang, P Zhang, N Ma, SJ Mo - Oncogenesis, 2019 - nature.com
Hypoxic microenvironment deregulates metabolic homeostasis in cancer cells albeit the
underlying mechanisms involved in this process remain hitherto enigmatic. 14-3-3ζ/Yes …
underlying mechanisms involved in this process remain hitherto enigmatic. 14-3-3ζ/Yes …